RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 MKL1Q969V6 931 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 SLF1Q9BQI6 1058 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 DSCC1Q9BVC3 393 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP3-203ENST00000586457 SPATC1LQ9H0A9 340 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 MROH8Q9H579 483 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 INCENPQ9NQS7 918 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 MTMR7Q9Y216 660 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 ZMYM6O95789 1325 aa12.85□□□□□ -0.35
CLIP3-203ENST00000586457 SLC15A5A6NIM6 579 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 SLC25A27O95847 323 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 NDUFB10O96000 172 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 TFRCP02786 760 aaKnown RBP12.84□□□□□ -0.35
CLIP3-203ENST00000586457 INHAP05111 366 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 BMP3P12645 472 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 CCL5P13501 91 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 ZKSCAN1P17029 563 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-203ENST00000586457 SLC1A4P43007 532 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 TRDNQ13061 729 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 CCDC178Q5BJE1 867 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 KIAA1755Q5JYT7 1200 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 IQCA1Q86XH1 822 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 KIFC2Q96AC6 838 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 CHMP4CQ96CF2 233 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 ATG4CQ96DT6 458 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 NUP88Q99567 741 aaPredicted RBP12.84□□□□□ -0.35
CLIP3-203ENST00000586457 PORCNQ9H237 461 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 BTBD7Q9P203 1132 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 FEM1BQ9UK73 627 aa12.84□□□□□ -0.35
CLIP3-203ENST00000586457 MGAMO43451 1857 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 IGKV6D-41A0A0C4DH26 115 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 HMGCRP04035 888 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 FCER1AP12319 257 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 XRCC5P13010 732 aaKnown RBP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 GSPT1P15170 499 aaKnown RBP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 EN2P19622 333 aaPredicted RBP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 COPB2P35606 906 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 STAT3P40763 770 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 NT5C2P49902 561 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 MFSD14CQ5VZR4 134 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 GMCL1P1Q8NEA9 526 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 MOV10L1Q9BXT6 1211 aaKnown RBP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 KRT23Q9C075 422 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 CNNM2Q9H8M5 875 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 HMX1Q9NP08 348 aaPredicted RBP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 GJD2Q9UKL4 321 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 PPP1R9AQ9ULJ8 1098 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.83□□□□□ -0.36
CLIP3-203ENST00000586457 RAD50Q92878 1312 aa12.83□□□□□ -0.36
CLIP3-203ENST00000586457 POTEFA5A3E0 1075 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 TMEM232C9JQI7 657 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 VWA5AO00534 786 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 FOXP2O15409 715 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 CNMDO75829 334 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 FDX1P10109 184 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 TOP1P11387 765 aaKnown RBP12.82□□□□□ -0.36
CLIP3-203ENST00000586457 ERCC3P19447 782 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 PTPREP23469 700 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 MCCP23508 829 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 CHMLP26374 656 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 STAT2P52630 851 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 MAP2K5Q13163 448 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 KCTD2Q14681 263 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 MTFR1Q15390 333 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 CCDC96Q2M329 555 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 FAM160B2Q86V87 743 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 CPXCR1Q8N123 301 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 SHCBP1Q8NEM2 672 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 STAG1Q8WVM7 1258 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 TTC14Q96N46 770 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 FBXO28Q9NVF7 368 aa12.82□□□□□ -0.36
CLIP3-203ENST00000586457 U3KPZ7 1027 aaPredicted RBP12.82□□□□□ -0.36
CLIP3-203ENST00000586457 ZSWIM8A7E2V4 1837 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 NMT2O60551 498 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 GJB1P08034 283 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 FGRP09769 529 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 CAPN2P17655 700 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 TMEM132BQ14DG7 1078 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 RCSD1Q6JBY9 416 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 DDX11Q96FC9 970 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 MMP19Q99542 508 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 APBA2Q99767 749 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 UBAC1Q9BSL1 405 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 UNC93B1Q9H1C4 597 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 RPTORQ8N122 1335 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 PLIN4Q96Q06 1357 aa12.81□□□□□ -0.36
CLIP3-203ENST00000586457 ERICH2A1L162 156 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 KDM4AO75164 1064 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 CNGA1P29973 690 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 MORN1Q5T089 497 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 SNRNP48Q6IEG0 339 aaKnown RBP12.8□□□□□ -0.36
CLIP3-203ENST00000586457 RALYLQ86SE5 291 aaKnown RBP12.8□□□□□ -0.36
CLIP3-203ENST00000586457 DCAF4Q8WV16 495 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 GMCL1Q96IK5 515 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 DEFB118Q96PH6 123 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 TEX13BQ9BXU2 312 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 KAT14Q9H8E8 782 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 IL17RBQ9NRM6 502 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 TCP11L1Q9NUJ3 509 aa12.8□□□□□ -0.36
CLIP3-203ENST00000586457 SGPL1O95470 568 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms