RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 CERKLQ49MI3 558 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 NBPF12Q5TAG4 269 aaPredicted RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 TMEM179Q6ZVK1 233 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 NUDT18Q6ZVK8 323 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 PACS2Q86VP3 889 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 TATDN2Q93075 761 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 GTF3C6Q969F1 213 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 DCPSQ96C86 337 aaKnown RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 INTS4Q96HW7 963 aaKnown RBP11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 ZKSCAN3Q9BRR0 538 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 MTMR4Q9NYA4 1195 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 SYNPO2Q9UMS6 1093 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 HPS5Q9UPZ3 1129 aa11.56□□□□□ -0.56
SMCHD1-212ENST00000585229 KLF18A0A0U1RQI7 1052 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 FAM196BA6NMK8 535 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 NMT2O60551 498 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 DDAH1O94760 285 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 CAP2P40123 477 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 IFIT1BQ5T764 474 aaKnown RBP11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 DCAF15Q66K64 600 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 NOL8Q76FK4 1167 aaKnown RBP11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 SULF1Q8IWU6 871 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 ZNF654Q8IZM8 581 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 CEP95Q96GE4 821 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 MAP3K14Q99558 947 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 ZNF341Q9BYN7 854 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 PNMA3Q9UL41 463 aa11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 SCAF8Q9UPN6 1271 aaKnown RBP11.55□□□□□ -0.56
SMCHD1-212ENST00000585229 CCDC69A6NI79 296 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 GOLGA8BA8MQT2 603 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 ADM5C9JUS6 153 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 JAG1P78504 1218 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 SCRN1Q12765 414 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 TROAPQ12815 778 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 ABCB5Q2M3G0 1257 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 SUPT20HL1Q3ZLR7 823 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 KRT26Q7Z3Y9 468 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 MKL1Q969V6 931 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 NYAP2Q9P242 653 aa11.54□□□□□ -0.56
SMCHD1-212ENST00000585229 TRPM7Q96QT4 1865 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 ZBTB43O43298 467 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CTNND1O60716 968 aaKnown RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 GDF11O95390 407 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 TTLL1O95922 423 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CALM1P0DP23 149 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CALM2P0DP24 149 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CALM3P0DP25 149 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 TOP1P11387 765 aaKnown RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 DDIT3P35638 169 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 MAP2K5Q13163 448 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 PPP2R5BQ15173 497 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 NOL9Q5SY16 702 aaKnown RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 NFXL1Q6ZNB6 911 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CDC37L1Q7L3B6 337 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 MIGA2Q7L4E1 593 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 LDHDQ86WU2 507 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CHMP4CQ96CF2 233 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 KLRG1Q96E93 195 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 TMEM47Q9BQJ4 181 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 LLPHQ9BRT6 129 aaKnown RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 SLKQ9H2G2 1235 aaPredicted RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 KANSL2Q9H9L4 492 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 RRAGCQ9HB90 399 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 CABP5Q9NP86 173 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 FAM217BQ9NTX9 383 aaPredicted RBP11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 ZBTB21Q9ULJ3 1066 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 SLC12A7Q9Y666 1083 aa11.53□□□□□ -0.56
SMCHD1-212ENST00000585229 MYH6P13533 1939 aa11.52□□□□□ -0.56
SMCHD1-212ENST00000585229 GH2P01242 217 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 ASNSP08243 561 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SNHG28P0DPA3 235 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SLC4A3P48751 1232 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 METAP2P50579 478 aaKnown RBP eCLIP11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SEPT2Q15019 361 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 MAP3K11Q16584 847 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SHROOM1Q2M3G4 852 aaPredicted RBP11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 EAPPQ56P03 285 aaPredicted RBP11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 CATIPQ7Z7H3 387 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SIAH1Q8IUQ4 282 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 CCDC83Q8IWF9 413 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 PNMA1Q8ND90 353 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 SMARCC2Q8TAQ2 1214 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 CDCA5Q96FF9 252 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 KAT14Q9H8E8 782 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 NMRK2Q9NPI5 230 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 PTPRFP10586 1907 aa11.52□□□□□ -0.57
SMCHD1-212ENST00000585229 GOLGA8AA7E2F4 631 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 MPHOSPH10O00566 681 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 CTDNEP1O95476 244 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 ICA1Q05084 483 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 GRM4Q14833 912 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 NTRK3Q16288 839 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 PRAMEF18Q5VWM3 479 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 SYNE3Q6ZMZ3 975 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 USP48Q86UV5 1035 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 CLEC10AQ8IUN9 316 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 NECAB1Q8N987 351 aa11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 KRI1Q8N9T8 703 aaKnown RBP11.51□□□□□ -0.57
SMCHD1-212ENST00000585229 FANCBQ8NB91 859 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms