RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 FTSJ3Q8IY81 847 aaKnown RBP26.37■■□□□ 1.81
SHMT1-210ENST00000583780 RHPN1Q8TCX5 695 aa26.37■■□□□ 1.81
SHMT1-210ENST00000583780 SWAP70Q9UH65 585 aa26.37■■□□□ 1.81
SHMT1-210ENST00000583780 SPTBN5Q9NRC6 3674 aaKnown RBP26.37■■□□□ 1.81
SHMT1-210ENST00000583780 PRKAB2O43741 272 aa26.36■■□□□ 1.81
SHMT1-210ENST00000583780 SLFNL1Q499Z3 407 aa26.36■■□□□ 1.81
SHMT1-210ENST00000583780 PPIL4Q8WUA2 492 aaKnown RBP eCLIP26.36■■□□□ 1.81
SHMT1-210ENST00000583780 TACC3Q9Y6A5 838 aa26.36■■□□□ 1.81
SHMT1-210ENST00000583780 TAL1P17542 331 aaPredicted RBP26.35■■□□□ 1.81
SHMT1-210ENST00000583780 ARMT1Q9H993 441 aa26.35■■□□□ 1.81
SHMT1-210ENST00000583780 NRBP1Q9UHY1 535 aa26.35■■□□□ 1.81
SHMT1-210ENST00000583780 GOLIM4O00461 696 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 WDR46O15213 610 aaKnown RBP26.34■■□□□ 1.81
SHMT1-210ENST00000583780 SLC25A27O95847 323 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 PGK2P07205 417 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 ZNF792Q3KQV3 632 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 TINF2Q9BSI4 451 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 ARHGEF10LQ9HCE6 1279 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 XPNPEP3Q9NQH7 507 aa26.34■■□□□ 1.81
SHMT1-210ENST00000583780 CYP2D7A0A087X1C5 515 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 KIAA0355O15063 1070 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 PGK1P00558 417 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 ZNF865P0CJ78 1059 aaPredicted RBP26.33■■□□□ 1.81
SHMT1-210ENST00000583780 CDK8P49336 464 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 ICA1Q05084 483 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 C12orf60Q5U649 245 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 RIOX2Q8IUF8 465 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 FBXO28Q9NVF7 368 aa26.33■■□□□ 1.81
SHMT1-210ENST00000583780 DIS3Q9Y2L1 958 aaKnown RBP26.33■■□□□ 1.81
SHMT1-210ENST00000583780 RARBP10826 455 aa26.32■■□□□ 1.8
SHMT1-210ENST00000583780 SAMD1Q6SPF0 538 aaPredicted RBP26.32■■□□□ 1.8
SHMT1-210ENST00000583780 CCDC17Q96LX7 622 aa26.32■■□□□ 1.8
SHMT1-210ENST00000583780 MMP19Q99542 508 aa26.32■■□□□ 1.8
SHMT1-210ENST00000583780 DNAJC2Q99543 621 aaKnown RBP26.32■■□□□ 1.8
SHMT1-210ENST00000583780 CLTBP09497 229 aa26.31■■□□□ 1.8
SHMT1-210ENST00000583780 EEF2P13639 858 aaKnown RBP26.31■■□□□ 1.8
SHMT1-210ENST00000583780 ATP8A2Q9NTI2 1148 aa26.31■■□□□ 1.8
SHMT1-210ENST00000583780 STAT3P40763 770 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 HSP90AB4PQ58FF6 505 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 RNF180Q86T96 592 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 REPS2Q8NFH8 660 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 SH2D4AQ9H788 454 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 ZNF214Q9UL59 606 aaPredicted RBP26.3■■□□□ 1.8
SHMT1-210ENST00000583780 TTC28Q96AY4 2481 aa26.3■■□□□ 1.8
SHMT1-210ENST00000583780 A0A1W2PQ45 241 aaPredicted RBP26.29■■□□□ 1.8
SHMT1-210ENST00000583780 A0A1W2PQY0 241 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 USP17L12C9JPN9 530 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 USP17L21D6R901 530 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 VWA5AO00534 786 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 ADAMTS4O75173 837 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 CHGBP05060 677 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 ADD2P35612 726 aa26.29■■□□□ 1.8
SHMT1-210ENST00000583780 CLASRPQ8N2M8 674 aaKnown RBP26.29■■□□□ 1.8
SHMT1-210ENST00000583780 MBD4O95243 580 aa26.28■■□□□ 1.8
SHMT1-210ENST00000583780 FAAP100Q0VG06 881 aa26.28■■□□□ 1.8
SHMT1-210ENST00000583780 C16orf86Q6ZW13 317 aa26.28■■□□□ 1.8
SHMT1-210ENST00000583780 PANK1Q8TE04 598 aa26.28■■□□□ 1.8
SHMT1-210ENST00000583780 LENG1Q96BZ8 264 aaPredicted RBP26.28■■□□□ 1.8
SHMT1-210ENST00000583780 RNPC3Q96LT9 517 aaKnown RBP26.28■■□□□ 1.8
SHMT1-210ENST00000583780 MYO9BQ13459 2157 aa26.28■■□□□ 1.8
SHMT1-210ENST00000583780 TMEM265A0A087WTH1 108 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 FOSL2P15408 326 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 RAG1P15918 1043 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 KCTD2Q14681 263 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 ANKRD33Q7Z3H0 272 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 KIF1BPQ96EK5 621 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 TOX2Q96NM4 488 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 TSEN34Q9BSV6 310 aaKnown RBP26.27■■□□□ 1.8
SHMT1-210ENST00000583780 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.27■■□□□ 1.8
SHMT1-210ENST00000583780 KANSL2Q9H9L4 492 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 PPP1R9AQ9ULJ8 1098 aa26.27■■□□□ 1.8
SHMT1-210ENST00000583780 ROBO3Q96MS0 1386 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 PQBP1O60828 265 aaKnown RBP26.26■■□□□ 1.79
SHMT1-210ENST00000583780 AKR1A1P14550 325 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 GRIN2CQ14957 1233 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 CCSAPQ6IQ19 270 aaPredicted RBP26.26■■□□□ 1.79
SHMT1-210ENST00000583780 SIRT2Q8IXJ6 389 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 KLHDC9Q8NEP7 349 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 TMEM39AQ9NV64 488 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 PAG1Q9NWQ8 432 aa26.26■■□□□ 1.79
SHMT1-210ENST00000583780 APBB1O00213 710 aa26.25■■□□□ 1.79
SHMT1-210ENST00000583780 SNAI1O95863 264 aaPredicted RBP26.25■■□□□ 1.79
SHMT1-210ENST00000583780 BOLA2Q9H3K6 86 aa26.25■■□□□ 1.79
SHMT1-210ENST00000583780 HSFX4A0A1B0GTS1 333 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-210ENST00000583780 HSFX3A0A1B0GWH4 333 aaPredicted RBP26.24■■□□□ 1.79
SHMT1-210ENST00000583780 IFIT2P09913 472 aaKnown RBP26.24■■□□□ 1.79
SHMT1-210ENST00000583780 ACLYP53396 1101 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 FPGSQ05932 587 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 FAM83BQ5T0W9 1011 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 CTR9Q6PD62 1173 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 PRDM6Q9NQX0 595 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 RIPK3Q9Y572 518 aa26.24■■□□□ 1.79
SHMT1-210ENST00000583780 ZBED9Q6R2W3 1325 aa26.23■■□□□ 1.79
SHMT1-210ENST00000583780 MYH7P12883 1935 aa26.23■■□□□ 1.79
SHMT1-210ENST00000583780 GREB1LQ9C091 1923 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-210ENST00000583780 SYNRGQ9UMZ2 1314 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 ATP5JP18859 108 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 IRX5P78411 483 aaPredicted RBP26.22■■□□□ 1.79
SHMT1-210ENST00000583780 KCNA10Q16322 511 aa26.22■■□□□ 1.79
SHMT1-210ENST00000583780 MAMDC4Q6UXC1 1216 aa26.22■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms