RNA–Protein interactions for RNA: ENST00000583708.5

UBBP4-201, Transcript of ubiquitin B pseudogene 4, humanhuman

BASIC

Gene UBBP4, Length 689 nt, Biotype transcribed unprocessed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-201ENST00000583708 PARK7Q99497 189 aaKnown RBP10.89□□□□□ -0.67
UBBP4-201ENST00000583708 BEGAINQ9BUH8 593 aa10.89□□□□□ -0.67
UBBP4-201ENST00000583708 ZFYVE28Q9HCC9 887 aa10.89□□□□□ -0.67
UBBP4-201ENST00000583708 PDRG1Q9NUG6 133 aa10.89□□□□□ -0.67
UBBP4-201ENST00000583708 SLC12A7Q9Y666 1083 aa10.89□□□□□ -0.67
UBBP4-201ENST00000583708 GREB1LQ9C091 1923 aaPredicted RBP10.89□□□□□ -0.67
UBBP4-201ENST00000583708 MYH8P13535 1937 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 DHX16O60231 1041 aaKnown RBP10.88□□□□□ -0.67
UBBP4-201ENST00000583708 ST18O60284 1047 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 NMT2O60551 498 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 VCAM1P19320 739 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 IRX3P78415 501 aaPredicted RBP10.88□□□□□ -0.67
UBBP4-201ENST00000583708 TROAPQ12815 778 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 GADL1Q6ZQY3 521 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 TEX2Q8IWB9 1127 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 JMYQ8N9B5 988 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 ZKSCAN3Q9BRR0 538 aa10.88□□□□□ -0.67
UBBP4-201ENST00000583708 RBM28Q9NW13 759 aaKnown RBP10.88□□□□□ -0.67
UBBP4-201ENST00000583708 BTBD19C9JJ37 291 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 PDHXO00330 501 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 PARP1P09874 1014 aaKnown RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 PDHBP11177 359 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 COPB2P35606 906 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 NEK4P51957 841 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 STAT2P52630 851 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 OAZ1P54368 228 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 ZNF543Q08ER8 600 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 ARHGEF6Q15052 776 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 SHROOM1Q2M3G4 852 aaPredicted RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 Q6ZUG5 572 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 ZNF654Q8IZM8 581 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 CTCFLQ8NI51 663 aaPredicted RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 ZSCAN31Q96LW9 406 aaPredicted RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 PTPN18Q99952 460 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 RPAP3Q9H6T3 665 aaPredicted RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 RBM27Q9P2N5 1060 aaKnown RBP10.87□□□□□ -0.67
UBBP4-201ENST00000583708 ADAMTS5Q9UNA0 930 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 RABGAP1Q9Y3P9 1069 aa10.87□□□□□ -0.67
UBBP4-201ENST00000583708 OTOFQ9HC10 1997 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 PALM3A6NDB9 673 aaPredicted RBP10.86□□□□□ -0.67
UBBP4-201ENST00000583708 ZBTB43O43298 467 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 AOC2O75106 756 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 DSG3P32926 999 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 GRM4Q14833 912 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 CPLX2Q6PUV4 134 aaKnown RBP10.86□□□□□ -0.67
UBBP4-201ENST00000583708 APOA5Q6Q788 366 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 CHST3Q7LGC8 479 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 CCDC84Q86UT8 332 aaPredicted RBP10.86□□□□□ -0.67
UBBP4-201ENST00000583708 LRRC47Q8N1G4 583 aaKnown RBP10.86□□□□□ -0.67
UBBP4-201ENST00000583708 FANCBQ8NB91 859 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 KIF2CQ99661 725 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 SLF1Q9BQI6 1058 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 ASCC2Q9H1I8 757 aaPredicted RBP10.86□□□□□ -0.67
UBBP4-201ENST00000583708 PPP1R9AQ9ULJ8 1098 aa10.86□□□□□ -0.67
UBBP4-201ENST00000583708 IGF2BP3O00425 579 aaKnown RBP eCLIP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 ATP2A1O14983 1001 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 TLR2O60603 784 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 ZBED4O75132 1171 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 FLOT1O75955 427 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 HERVK_113P62684 666 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 CCNA1P78396 465 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 GRM1Q13255 1194 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 TAF1CQ15572 869 aaPredicted RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 FAM177A1Q8N128 213 aaPredicted RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 BRF1Q92994 677 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 UPF3BQ9BZI7 483 aaKnown RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 TANGO6Q9C0B7 1094 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 SH2B1Q9NRF2 756 aaPredicted RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 WBP1LQ9NX94 342 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.85□□□□□ -0.67
UBBP4-201ENST00000583708 MORF4L1Q9UBU8 362 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 LIMCH1Q9UPQ0 1083 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 PHIPQ8WWQ0 1821 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 ATAD5Q96QE3 1844 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 NID2Q14112 1375 aa10.85□□□□□ -0.67
UBBP4-201ENST00000583708 KLF18A0A0U1RQI7 1052 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 TMEM232C9JQI7 657 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 KLRF2D3W0D1 207 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 CDKL5O76039 1030 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 SLC25A27O95847 323 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 GNRH1P01148 92 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 PDIA3P30101 505 aaKnown RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 MKRN3Q13064 507 aaKnown RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 ZYXQ15942 572 aaKnown RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 CCDC96Q2M329 555 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 TKFCQ3LXA3 575 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 FAM83BQ5T0W9 1011 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 TREML2Q5T2D2 321 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 CLEC10AQ8IUN9 316 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 SPICE1Q8N0Z3 855 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 FAM43AQ8N2R8 423 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 SAMD3Q8N6K7 520 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 NKX2-3Q8TAU0 364 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 SMCR8Q8TEV9 937 aaPredicted RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 P2RX7Q99572 595 aaKnown RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 SPZ1Q9BXG8 430 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 RNF186Q9NXI6 227 aa10.84□□□□□ -0.67
UBBP4-201ENST00000583708 CTDP1Q9Y5B0 961 aaPredicted RBP10.84□□□□□ -0.67
UBBP4-201ENST00000583708 VWA5AO00534 786 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms