RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SALL3Q9BXA9 1300 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 MKNK2Q9HBH9 465 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 SLC5A4Q9NY91 659 aa24.48■■□□□ 1.51
SHMT1-209ENST00000582653 DDX20Q9UHI6 824 aaKnown RBP24.48■■□□□ 1.51
SHMT1-209ENST00000582653 ALPK3Q96L96 1907 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 GNAT2P19087 354 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 CNGA1P29973 690 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 TDO2P48775 406 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 NCAPG2Q86XI2 1143 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 GOPCQ9HD26 462 aa24.47■■□□□ 1.51
SHMT1-209ENST00000582653 ZMYND8Q9ULU4 1186 aaPredicted RBP24.47■■□□□ 1.51
SHMT1-209ENST00000582653 PATL2C9JE40 543 aaKnown RBP24.46■■□□□ 1.51
SHMT1-209ENST00000582653 COBLO75128 1261 aa24.46■■□□□ 1.51
SHMT1-209ENST00000582653 SLC25A27O95847 323 aa24.46■■□□□ 1.51
SHMT1-209ENST00000582653 TMEM132BQ14DG7 1078 aa24.46■■□□□ 1.51
SHMT1-209ENST00000582653 LRRFIP1Q32MZ4 808 aaKnown RBP24.46■■□□□ 1.51
SHMT1-209ENST00000582653 IFNL3Q8IZI9 196 aa24.46■■□□□ 1.51
SHMT1-209ENST00000582653 TRPV1Q8NER1 839 aa24.46■■□□□ 1.51
SHMT1-209ENST00000582653 ZBTB47Q9UFB7 747 aaPredicted RBP24.46■■□□□ 1.51
SHMT1-209ENST00000582653 RAD21O60216 631 aa24.45■■□□□ 1.5
SHMT1-209ENST00000582653 HDAC1Q13547 482 aaPredicted RBP24.45■■□□□ 1.5
SHMT1-209ENST00000582653 FBXO28Q9NVF7 368 aa24.45■■□□□ 1.5
SHMT1-209ENST00000582653 PRDM1O75626 825 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 FCER1AP12319 257 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 CYBAP13498 195 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 SYN1P17600 705 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 ZMYM1Q5SVZ6 1142 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 NYAP2Q9P242 653 aa24.44■■□□□ 1.5
SHMT1-209ENST00000582653 ROBO3Q96MS0 1386 aa24.43■■□□□ 1.5
SHMT1-209ENST00000582653 LRRC26Q2I0M4 334 aa24.43■■□□□ 1.5
SHMT1-209ENST00000582653 RIOX2Q8IUF8 465 aa24.43■■□□□ 1.5
SHMT1-209ENST00000582653 SENP6Q9GZR1 1112 aaPredicted RBP24.43■■□□□ 1.5
SHMT1-209ENST00000582653 PPP1R9AQ9ULJ8 1098 aa24.43■■□□□ 1.5
SHMT1-209ENST00000582653 A0A0G2JMZ2 1700 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 VWA5AO00534 786 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 STAT3P40763 770 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 FAM83BQ5T0W9 1011 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 CCDC129Q6ZRS4 1044 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 ZNF444Q8N0Y2 327 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-209ENST00000582653 MAML3Q96JK9 1138 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 ZNF287Q9HBT7 754 aa24.42■■□□□ 1.5
SHMT1-209ENST00000582653 F5H6K3 240 aa24.41■■□□□ 1.5
SHMT1-209ENST00000582653 DNM1LO00429 736 aa24.41■■□□□ 1.5
SHMT1-209ENST00000582653 KLRC3Q07444 240 aa24.41■■□□□ 1.5
SHMT1-209ENST00000582653 ARRDC4Q8NCT1 418 aa24.41■■□□□ 1.5
SHMT1-209ENST00000582653 NUP88Q99567 741 aaPredicted RBP24.41■■□□□ 1.5
SHMT1-209ENST00000582653 SEPT4O43236 478 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 MAGEA10P43363 369 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-209ENST00000582653 PDE1AP54750 535 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 REPS2Q8NFH8 660 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 MKL1Q969V6 931 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 NACAP1Q9BZK3 213 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 CLIP2Q9UDT6 1046 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 ZNF214Q9UL59 606 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-209ENST00000582653 ZNF236Q9UL36 1845 aa24.4■■□□□ 1.5
SHMT1-209ENST00000582653 GREB1LQ9C091 1923 aaPredicted RBP24.39■■□□□ 1.5
SHMT1-209ENST00000582653 IGKV6D-41A0A0C4DH26 115 aa24.39■■□□□ 1.49
SHMT1-209ENST00000582653 PRAMEF19Q5SWL8 479 aa24.39■■□□□ 1.49
SHMT1-209ENST00000582653 MMP19Q99542 508 aa24.39■■□□□ 1.49
SHMT1-209ENST00000582653 NAPBQ9H115 298 aa24.39■■□□□ 1.49
SHMT1-209ENST00000582653 DIS3Q9Y2L1 958 aaKnown RBP24.39■■□□□ 1.49
SHMT1-209ENST00000582653 SOX1O00570 391 aaPredicted RBP24.38■■□□□ 1.49
SHMT1-209ENST00000582653 FOXP2O15409 715 aa24.38■■□□□ 1.49
SHMT1-209ENST00000582653 COPB2P35606 906 aa24.38■■□□□ 1.49
SHMT1-209ENST00000582653 PRPF38AQ8NAV1 312 aaKnown RBP24.38■■□□□ 1.49
SHMT1-209ENST00000582653 EVI5LQ96CN4 794 aa24.38■■□□□ 1.49
SHMT1-209ENST00000582653 LNPKQ9C0E8 428 aa24.38■■□□□ 1.49
SHMT1-209ENST00000582653 PARP14Q460N5 1801 aa24.38■■□□□ 1.49
SHMT1-209ENST00000582653 PPARAQ07869 468 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 KCTD2Q14681 263 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 FAM47AQ5JRC9 791 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 GJC2Q5T442 439 aaPredicted RBP24.37■■□□□ 1.49
SHMT1-209ENST00000582653 B4GALNT3Q6L9W6 998 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 CEP95Q96GE4 821 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 SLF1Q9BQI6 1058 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 NRBP1Q9UHY1 535 aa24.37■■□□□ 1.49
SHMT1-209ENST00000582653 NDUFB10O96000 172 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 ZNF792Q3KQV3 632 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 EXOC6Q8TAG9 804 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 MTMR4Q9NYA4 1195 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 SYNPO2Q9UMS6 1093 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 LAMA3Q16787 3333 aa24.36■■□□□ 1.49
SHMT1-209ENST00000582653 IGHDP01880 384 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 PGK2P07205 417 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 LRIT3Q3SXY7 679 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 VPS53Q5VIR6 699 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 ANO1Q5XXA6 986 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 TDHQ8IZJ6 230 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 LRCH3Q96II8 777 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 TINF2Q9BSI4 451 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 UBE2OQ9C0C9 1292 aaKnown RBP24.35■■□□□ 1.49
SHMT1-209ENST00000582653 INCENPQ9NQS7 918 aa24.35■■□□□ 1.49
SHMT1-209ENST00000582653 ZNFX1Q9P2E3 1918 aaKnown RBP24.34■■□□□ 1.49
SHMT1-209ENST00000582653 COL11A1P12107 1806 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-209ENST00000582653 TSPY3P0CV98 308 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 TSPY8P0CW00 308 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 ATN1P54259 1190 aaPredicted RBP24.34■■□□□ 1.49
SHMT1-209ENST00000582653 TFAP4Q01664 338 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 CTDSPL2Q05D32 466 aa24.34■■□□□ 1.49
SHMT1-209ENST00000582653 PDE4BQ07343 736 aa24.34■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms