RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 HMGCRP04035 888 aa28.33■■■□□ 2.13
SHMT1-206ENST00000579558 RGS2P41220 211 aa28.33■■■□□ 2.13
SHMT1-206ENST00000579558 MORN1Q5T089 497 aa28.33■■■□□ 2.13
SHMT1-206ENST00000579558 LRRC47Q8N1G4 583 aaKnown RBP28.33■■■□□ 2.13
SHMT1-206ENST00000579558 NUP88Q99567 741 aaPredicted RBP28.33■■■□□ 2.13
SHMT1-206ENST00000579558 MOV10L1Q9BXT6 1211 aaKnown RBP28.33■■■□□ 2.13
SHMT1-206ENST00000579558 SYNPO2Q9UMS6 1093 aa28.33■■■□□ 2.13
SHMT1-206ENST00000579558 IVNS1ABPQ9Y6Y0 642 aa28.33■■■□□ 2.13
SHMT1-206ENST00000579558 ORC4O43929 436 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 RANBP6O60518 1105 aaKnown RBP28.32■■■□□ 2.12
SHMT1-206ENST00000579558 GJB1P08034 283 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 XRCC5P13010 732 aaKnown RBP28.32■■■□□ 2.12
SHMT1-206ENST00000579558 HAND2P61296 217 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 PLS1Q14651 629 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 USP6NLQ92738 828 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 TOMM22Q9NS69 142 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 PPP1R9AQ9ULJ8 1098 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 BRCA2P51587 3418 aa28.32■■■□□ 2.12
SHMT1-206ENST00000579558 PTPREP23469 700 aa28.31■■■□□ 2.12
SHMT1-206ENST00000579558 PPP4R3BQ5MIZ7 849 aa28.31■■■□□ 2.12
SHMT1-206ENST00000579558 NKX2-3Q8TAU0 364 aa28.31■■■□□ 2.12
SHMT1-206ENST00000579558 TRIB2Q92519 343 aa28.31■■■□□ 2.12
SHMT1-206ENST00000579558 SLC15A5A6NIM6 579 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 FGRP09769 529 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 MAP2K5Q13163 448 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 RRP12Q5JTH9 1297 aaKnown RBP28.3■■■□□ 2.12
SHMT1-206ENST00000579558 GMCL1P1Q8NEA9 526 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 SHCBP1Q8NEM2 672 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 APBA2Q99767 749 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 ADAMTS5Q9UNA0 930 aa28.3■■■□□ 2.12
SHMT1-206ENST00000579558 COL11A1P12107 1806 aaPredicted RBP28.29■■■□□ 2.12
SHMT1-206ENST00000579558 ZKSCAN1P17029 563 aaPredicted RBP28.29■■■□□ 2.12
SHMT1-206ENST00000579558 GJA8P48165 433 aa28.29■■■□□ 2.12
SHMT1-206ENST00000579558 TRMT44Q8IYL2 757 aaKnown RBP28.29■■■□□ 2.12
SHMT1-206ENST00000579558 SLF1Q9BQI6 1058 aa28.29■■■□□ 2.12
SHMT1-206ENST00000579558 STX8Q9UNK0 236 aa28.29■■■□□ 2.12
SHMT1-206ENST00000579558 VWA5AO00534 786 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 ERCC3P19447 782 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 TRIM32Q13049 653 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 GRB14Q14449 540 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 TMEM132BQ14DG7 1078 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 SHISA4Q96DD7 197 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 IL17RBQ9NRM6 502 aa28.28■■■□□ 2.12
SHMT1-206ENST00000579558 NMT2O60551 498 aa28.27■■■□□ 2.12
SHMT1-206ENST00000579558 SLFN13Q68D06 897 aa28.27■■■□□ 2.12
SHMT1-206ENST00000579558 NCAPG2Q86XI2 1143 aa28.27■■■□□ 2.12
SHMT1-206ENST00000579558 U2AF1L4Q8WU68 220 aaKnown RBP28.27■■■□□ 2.12
SHMT1-206ENST00000579558 CCL14Q16627 93 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 AKNAD1Q5T1N1 836 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 MFSD6Q6ZSS7 791 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 TBC1D10CQ8IV04 446 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 DSCC1Q9BVC3 393 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 NBPF3Q9H094 633 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 XRN2Q9H0D6 950 aaKnown RBP eCLIP28.26■■■□□ 2.11
SHMT1-206ENST00000579558 MROH8Q9H579 483 aa28.26■■■□□ 2.11
SHMT1-206ENST00000579558 PAK6Q9NQU5 681 aaPredicted RBP28.26■■■□□ 2.11
SHMT1-206ENST00000579558 LAMA4Q16363 1823 aa28.25■■■□□ 2.11
SHMT1-206ENST00000579558 ZNF213O14771 459 aa28.25■■■□□ 2.11
SHMT1-206ENST00000579558 PCP11498 1178 aaKnown RBP28.25■■■□□ 2.11
SHMT1-206ENST00000579558 PRPF38AQ8NAV1 312 aaKnown RBP28.25■■■□□ 2.11
SHMT1-206ENST00000579558 STAG1Q8WVM7 1258 aa28.25■■■□□ 2.11
SHMT1-206ENST00000579558 DEFB118Q96PH6 123 aa28.25■■■□□ 2.11
SHMT1-206ENST00000579558 RNF41Q9H4P4 317 aaPredicted RBP28.25■■■□□ 2.11
SHMT1-206ENST00000579558 HMX1Q9NP08 348 aaPredicted RBP28.25■■■□□ 2.11
SHMT1-206ENST00000579558 ISY1Q9ULR0 285 aaKnown RBP28.25■■■□□ 2.11
SHMT1-206ENST00000579558 RPTORQ8N122 1335 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 STRNO43815 780 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 SGPL1O95470 568 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 SLC25A27O95847 323 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 BMP3P12645 472 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 REPS2Q8NFH8 660 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 IL25Q9H293 177 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 FEM1BQ9UK73 627 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 ZNF236Q9UL36 1845 aa28.24■■■□□ 2.11
SHMT1-206ENST00000579558 PRKAR2AP13861 404 aaKnown RBP28.23■■■□□ 2.11
SHMT1-206ENST00000579558 ADORA2AP29274 412 aa28.23■■■□□ 2.11
SHMT1-206ENST00000579558 STAT3P40763 770 aa28.23■■■□□ 2.11
SHMT1-206ENST00000579558 RIOX2Q8IUF8 465 aa28.23■■■□□ 2.11
SHMT1-206ENST00000579558 KIFC2Q96AC6 838 aa28.23■■■□□ 2.11
SHMT1-206ENST00000579558 ZNF214Q9UL59 606 aaPredicted RBP28.23■■■□□ 2.11
SHMT1-206ENST00000579558 RAD50Q92878 1312 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 HOXC6P09630 235 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 MAP3K21Q5TCX8 1036 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 CENPQQ7L2Z9 268 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-206ENST00000579558 DPP9Q86TI2 863 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 NPLOC4Q8TAT6 608 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 RUFY2Q8WXA3 655 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 CHMP4CQ96CF2 233 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 GMCL1Q96IK5 515 aa28.22■■■□□ 2.11
SHMT1-206ENST00000579558 CTDP1Q9Y5B0 961 aaPredicted RBP28.22■■■□□ 2.11
SHMT1-206ENST00000579558 TFRCP02786 760 aaKnown RBP28.21■■■□□ 2.11
SHMT1-206ENST00000579558 CHMLP26374 656 aa28.21■■■□□ 2.11
SHMT1-206ENST00000579558 SLC1A4P43007 532 aa28.21■■■□□ 2.11
SHMT1-206ENST00000579558 NOVP48745 357 aa28.21■■■□□ 2.11
SHMT1-206ENST00000579558 TCP11L1Q9NUJ3 509 aa28.21■■■□□ 2.11
SHMT1-206ENST00000579558 CTNNA3Q9UI47 895 aa28.21■■■□□ 2.11
SHMT1-206ENST00000579558 NEDD4P46934 1319 aa28.2■■■□□ 2.11
SHMT1-206ENST00000579558 MKI67P46013 3256 aaKnown RBP28.2■■■□□ 2.11
SHMT1-206ENST00000579558 ZBED4O75132 1171 aa28.2■■■□□ 2.1
SHMT1-206ENST00000579558 FCER1AP12319 257 aa28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms