RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 NPLOC4Q8TAT6 608 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 DSCC1Q9BVC3 393 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 TM6SF1Q9BZW5 370 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 ANTXR1Q9H6X2 564 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 RABGAP1Q9Y3P9 1069 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 CYP46A1Q9Y6A2 500 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 IVNS1ABPQ9Y6Y0 642 aa11.98□□□□□ -0.49
SS18-207ENST00000577636 PLXNB2O15031 1838 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 LOC285556D6RIA3 1793 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 COL2A1P02458 1487 aaPredicted RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 CYP2E1P05181 493 aaPredicted RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 CYP7A1P22680 504 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 PPP4CP60510 307 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 NECTIN1Q15223 517 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 UBE3CQ15386 1083 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 SHHQ15465 462 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 FAM109BQ6ICB4 259 aaPredicted RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 DPP9Q86TI2 863 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 ZNF589Q86UQ0 364 aaPredicted RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 LPAR1Q92633 364 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 JAKMIP1Q96N16 626 aaKnown RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 CDX2Q99626 313 aaPredicted RBP11.97□□□□□ -0.49
SS18-207ENST00000577636 GINM1Q9NU53 330 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 CHMP5Q9NZZ3 219 aa11.97□□□□□ -0.49
SS18-207ENST00000577636 SLC15A5A6NIM6 579 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 SLC27A2O14975 620 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 CASTP20810 708 aaKnown RBP11.96□□□□□ -0.49
SS18-207ENST00000577636 ADD2P35612 726 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 ANKRD1Q15327 319 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 CATSPERGQ6ZRH7 1159 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 METTL16Q86W50 562 aaKnown RBP11.96□□□□□ -0.49
SS18-207ENST00000577636 MIGA1Q8NAN2 632 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 ACER1Q8TDN7 264 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 KCNB2Q92953 911 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 RNF216Q9NWF9 866 aaPredicted RBP11.96□□□□□ -0.49
SS18-207ENST00000577636 BTBD7Q9P203 1132 aa11.96□□□□□ -0.49
SS18-207ENST00000577636 CIZ1Q9ULV3 898 aaPredicted RBP11.96□□□□□ -0.49
SS18-207ENST00000577636 ATAD5Q96QE3 1844 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 DNM1LO00429 736 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 MSCO60682 206 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 IGSF3O75054 1194 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 HMGB1P09429 215 aaKnown RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 CERKLQ49MI3 558 aaPredicted RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 C9orf50Q5SZB4 431 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 VPS53Q5VIR6 699 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 TMED8Q6PL24 325 aaPredicted RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 BLOC1S2Q6QNY1 142 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 SAMD1Q6SPF0 538 aaPredicted RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 CCDC129Q6ZRS4 1044 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 TRPV1Q8NER1 839 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 MAFAQ8NHW3 353 aaPredicted RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 BADQ92934 168 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 SEC62Q99442 399 aaKnown RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 UPF3BQ9BZI7 483 aaKnown RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 SEMA6BQ9H3T3 888 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 RPAP3Q9H6T3 665 aaPredicted RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 CABP5Q9NP86 173 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 PIH1D3Q9NQM4 214 aaKnown RBP11.95□□□□□ -0.5
SS18-207ENST00000577636 PDRG1Q9NUG6 133 aa11.95□□□□□ -0.5
SS18-207ENST00000577636 ZNF532Q9HCE3 1301 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 KBTBD13C9JR72 458 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 PDE6AP16499 860 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 GNAT2P19087 354 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 VCAM1P19320 739 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 USP14P54578 494 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 IMMTQ16891 758 aaKnown RBP11.94□□□□□ -0.5
SS18-207ENST00000577636 ABCB5Q2M3G0 1257 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 TSGA10IPQ3SY00 556 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 PRAMEF19Q5SWL8 479 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 RUFY3Q7L099 469 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 RASEFQ8IZ41 740 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 ARRDC4Q8NCT1 418 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 MYLIPQ8WY64 445 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 FERMT2Q96AC1 680 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 ZSCAN31Q96LW9 406 aaPredicted RBP11.94□□□□□ -0.5
SS18-207ENST00000577636 ZSWIM6Q9HCJ5 1215 aa11.94□□□□□ -0.5
SS18-207ENST00000577636 M0R2C6 588 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 MPHOSPH10O00566 681 aaKnown RBP11.93□□□□□ -0.5
SS18-207ENST00000577636 GPAA1O43292 621 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 CD2BP2O95400 341 aaKnown RBP11.93□□□□□ -0.5
SS18-207ENST00000577636 APPP05067 770 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 HSPD1P10809 573 aaKnown RBP11.93□□□□□ -0.5
SS18-207ENST00000577636 FGD1P98174 961 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 GRB14Q14449 540 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 PLS1Q14651 629 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 TRIM60Q495X7 471 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 TATDN1Q6P1N9 297 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 MAGEB6Q8N7X4 407 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 OSBP2Q969R2 916 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 C12orf42Q96LP6 360 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 ANP32EQ9BTT0 268 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 NACAP1Q9BZK3 213 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 SERPINB13Q9UIV8 391 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 LIMCH1Q9UPQ0 1083 aa11.93□□□□□ -0.5
SS18-207ENST00000577636 SPDYE16A6NNV3 312 aaPredicted RBP11.92□□□□□ -0.5
SS18-207ENST00000577636 POLR3DP05423 398 aaPredicted RBP11.92□□□□□ -0.5
SS18-207ENST00000577636 ADORA2AP29274 412 aa11.92□□□□□ -0.5
SS18-207ENST00000577636 ADCYAP1R1P41586 468 aa11.92□□□□□ -0.5
SS18-207ENST00000577636 SH3RF1Q7Z6J0 888 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms