RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 RASGRP2Q7LDG7 609 aa10.04□□□□□ -0.8
NUP88-211ENST00000575976 ANKRD23Q86SG2 305 aa10.04□□□□□ -0.8
NUP88-211ENST00000575976 REM2Q8IYK8 340 aaPredicted RBP10.04□□□□□ -0.8
NUP88-211ENST00000575976 PNMA1Q8ND90 353 aa10.04□□□□□ -0.8
NUP88-211ENST00000575976 LPAR1Q92633 364 aa10.04□□□□□ -0.8
NUP88-211ENST00000575976 NUP88Q99567 741 aaPredicted RBP10.04□□□□□ -0.8
NUP88-211ENST00000575976 RPAP3Q9H6T3 665 aaPredicted RBP10.04□□□□□ -0.8
NUP88-211ENST00000575976 CCDC69A6NI79 296 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L15C9J2P7 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L13C9JLJ4 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L11C9JVI0 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L18D6R9N7 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L22D6RA61 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L17D6RBQ6 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L19D6RCP7 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L20D6RJB6 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 WDR46O15213 610 aaKnown RBP10.03□□□□□ -0.8
NUP88-211ENST00000575976 PDHBP11177 359 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 HOXA7P31268 230 aaPredicted RBP10.03□□□□□ -0.8
NUP88-211ENST00000575976 FGD1P98174 961 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 USP17L24Q0WX57 530 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 FAM83BQ5T0W9 1011 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 NFXL1Q6ZNB6 911 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 CATSPERGQ6ZRH7 1159 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 TMTC2Q8N394 836 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 GMCL1Q96IK5 515 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 AGXT2Q9BYV1 514 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 PDRG1Q9NUG6 133 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 BRPF3Q9ULD4 1205 aa10.03□□□□□ -0.8
NUP88-211ENST00000575976 PTPRFP10586 1907 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 MYH4Q9Y623 1939 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 SNHG28P0DPA3 235 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 CYP2C8P10632 490 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 BMP3P12645 472 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 OSBPP22059 807 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 SLC1A4P43007 532 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 NEK4P51957 841 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 APOBRQ0VD83 1088 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 PABPC4Q13310 644 aaKnown RBP eCLIP10.02□□□□□ -0.81
NUP88-211ENST00000575976 TOB2Q14106 344 aaPredicted RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 OTUD7BQ6GQQ9 843 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 KCTD1Q719H9 257 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 CATIPQ7Z7H3 387 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 SGMS1Q86VZ5 419 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 RAB11FIP4Q86YS3 637 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 ZNF654Q8IZM8 581 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 FBXL16Q8N461 479 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 DCAF4Q8WV16 495 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 BRF1Q92994 677 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 LARP6Q9BRS8 491 aaKnown RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 MYL10Q9BUA6 226 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 ASCC2Q9H1I8 757 aaPredicted RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 ZCCHC17Q9NP64 241 aaKnown RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 GPCPD1Q9NPB8 672 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 FBXO28Q9NVF7 368 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 ISY1Q9ULR0 285 aaKnown RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 SLC45A1Q9Y2W3 748 aa10.02□□□□□ -0.81
NUP88-211ENST00000575976 FRMPD2Q68DX3 1309 aaPredicted RBP10.02□□□□□ -0.81
NUP88-211ENST00000575976 LOC285556D6RIA3 1793 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 KLF18A0A0U1RQI7 1052 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 GOLGA8HP0CJ92 632 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 RXRAP19793 462 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 AK2P54819 239 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 IRX3P78415 501 aaPredicted RBP10.01□□□□□ -0.81
NUP88-211ENST00000575976 ZNF543Q08ER8 600 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 TROAPQ12815 778 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 TAF1CQ15572 869 aaPredicted RBP10.01□□□□□ -0.81
NUP88-211ENST00000575976 CCDC96Q2M329 555 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 TTBK2Q6IQ55 1244 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 NUP133Q8WUM0 1156 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 P2RX7Q99572 595 aaKnown RBP10.01□□□□□ -0.81
NUP88-211ENST00000575976 TANGO6Q9C0B7 1094 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 RNF186Q9NXI6 227 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 SLC12A7Q9Y666 1083 aa10.01□□□□□ -0.81
NUP88-211ENST00000575976 TMEM232C9JQI7 657 aa10□□□□□ -0.81
NUP88-211ENST00000575976 TRPA1O75762 1119 aa10□□□□□ -0.81
NUP88-211ENST00000575976 FLOT1O75955 427 aa10□□□□□ -0.81
NUP88-211ENST00000575976 DDAH1O94760 285 aa10□□□□□ -0.81
NUP88-211ENST00000575976 TBC1D8O95759 1140 aa10□□□□□ -0.81
NUP88-211ENST00000575976 ALDH1A1P00352 501 aa10□□□□□ -0.81
NUP88-211ENST00000575976 PARP1P09874 1014 aaKnown RBP10□□□□□ -0.81
NUP88-211ENST00000575976 DSG3P32926 999 aa10□□□□□ -0.81
NUP88-211ENST00000575976 SLC16A2P36021 539 aa10□□□□□ -0.81
NUP88-211ENST00000575976 CRHR2Q13324 411 aa10□□□□□ -0.81
NUP88-211ENST00000575976 COG2Q14746 738 aa10□□□□□ -0.81
NUP88-211ENST00000575976 GRM4Q14833 912 aa10□□□□□ -0.81
NUP88-211ENST00000575976 APOA5Q6Q788 366 aa10□□□□□ -0.81
NUP88-211ENST00000575976 SAMD1Q6SPF0 538 aaPredicted RBP10□□□□□ -0.81
NUP88-211ENST00000575976 SYNE3Q6ZMZ3 975 aa10□□□□□ -0.81
NUP88-211ENST00000575976 CCDC144CPQ8IYA2 1237 aa10□□□□□ -0.81
NUP88-211ENST00000575976 STAG2Q8N3U4 1231 aa10□□□□□ -0.81
NUP88-211ENST00000575976 PARK7Q99497 189 aaKnown RBP10□□□□□ -0.81
NUP88-211ENST00000575976 UBA5Q9GZZ9 404 aa10□□□□□ -0.81
NUP88-211ENST00000575976 ALDH8A1Q9H2A2 487 aaPredicted RBP10□□□□□ -0.81
NUP88-211ENST00000575976 RNF39Q9H2S5 420 aa10□□□□□ -0.81
NUP88-211ENST00000575976 CPVLQ9H3G5 476 aa10□□□□□ -0.81
NUP88-211ENST00000575976 R3HDMLQ9H3Y0 253 aa10□□□□□ -0.81
NUP88-211ENST00000575976 ZFYVE28Q9HCC9 887 aa10□□□□□ -0.81
NUP88-211ENST00000575976 MAD2L2Q9UI95 211 aa10□□□□□ -0.81
NUP88-211ENST00000575976 FEM1BQ9UK73 627 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms