RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 MAP3K14Q99558 947 aa21.29■■□□□ 1
CCDC40-213ENST00000574933 PLA2G6O60733 806 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 ALDH1A1P00352 501 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 RCAN1P53805 252 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 SPICE1Q8N0Z3 855 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 CFHR5Q9BXR6 569 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 RPAP3Q9H6T3 665 aaPredicted RBP21.28■■□□□ 1
CCDC40-213ENST00000574933 PDRG1Q9NUG6 133 aa21.28■■□□□ 1
CCDC40-213ENST00000574933 PDHXO00330 501 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 DDAH1O94760 285 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 BMP3P12645 472 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 SLC1A4P43007 532 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 TOB2Q14106 344 aaPredicted RBP21.27■■□□□ 1
CCDC40-213ENST00000574933 RABEP1Q15276 862 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 CATIPQ7Z7H3 387 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 ZNF654Q8IZM8 581 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 JMYQ8N9B5 988 aa21.27■■□□□ 1
CCDC40-213ENST00000574933 MYPNQ86TC9 1320 aa21.27■□□□□ 0.99
CCDC40-213ENST00000574933 CCDC69A6NI79 296 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 NEK4P51957 841 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 ZNF543Q08ER8 600 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 FAM83BQ5T0W9 1011 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 APOA5Q6Q788 366 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 BTNL9Q6UXG8 535 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 BRF1Q92994 677 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 ASCC2Q9H1I8 757 aaPredicted RBP21.26■□□□□ 0.99
CCDC40-213ENST00000574933 PNMA3Q9UL41 463 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 SMCHD1A6NHR9 2005 aa21.26■□□□□ 0.99
CCDC40-213ENST00000574933 NID2Q14112 1375 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 CALM1P0DP23 149 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 CALM2P0DP24 149 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 CALM3P0DP25 149 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 OSBPP22059 807 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 FGD1P98174 961 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 MAP2K1Q02750 393 aaPredicted RBP21.25■□□□□ 0.99
CCDC40-213ENST00000574933 GRM4Q14833 912 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 ASPRV1Q53RT3 343 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 GPATCH4Q5T3I0 446 aaKnown RBP21.25■□□□□ 0.99
CCDC40-213ENST00000574933 LBX2Q6XYB7 198 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 NFXL1Q6ZNB6 911 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 NUP88Q99567 741 aaPredicted RBP21.25■□□□□ 0.99
CCDC40-213ENST00000574933 FEM1BQ9UK73 627 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 BRPF3Q9ULD4 1205 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 SLC12A7Q9Y666 1083 aa21.25■□□□□ 0.99
CCDC40-213ENST00000574933 CEP350Q5VT06 3117 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 PALM3A6NDB9 673 aaPredicted RBP21.24■□□□□ 0.99
CCDC40-213ENST00000574933 CA12O43570 354 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 RAD21O60216 631 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 COG2Q14746 738 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 ANKRD1Q15327 319 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 RASGRP2Q7LDG7 609 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 PARK7Q99497 189 aaKnown RBP21.24■□□□□ 0.99
CCDC40-213ENST00000574933 ADAMTS5Q9UNA0 930 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 ADGRA2Q96PE1 1338 aa21.24■□□□□ 0.99
CCDC40-213ENST00000574933 DOCK3Q8IZD9 2030 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 PARP1P09874 1014 aaKnown RBP21.23■□□□□ 0.99
CCDC40-213ENST00000574933 DSG3P32926 999 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 IRX3P78415 501 aaPredicted RBP21.23■□□□□ 0.99
CCDC40-213ENST00000574933 APOBRQ0VD83 1088 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 TAF1CQ15572 869 aaPredicted RBP21.23■□□□□ 0.99
CCDC40-213ENST00000574933 FAM160B2Q86V87 743 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 GTF3C2Q8WUA4 911 aaPredicted RBP21.23■□□□□ 0.99
CCDC40-213ENST00000574933 CHURC1Q8WUH1 139 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 TANGO6Q9C0B7 1094 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 WBP1LQ9NX94 342 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 SAGE1Q9NXZ1 904 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 HOXC10Q9NYD6 342 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 MAD2L2Q9UI95 211 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 PPP1R9AQ9ULJ8 1098 aa21.23■□□□□ 0.99
CCDC40-213ENST00000574933 MGAMO43451 1857 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 KLF18A0A0U1RQI7 1052 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 TMEM232C9JQI7 657 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 AK2P54819 239 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 PPP2R5BQ15173 497 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 CCDC96Q2M329 555 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 SYNE3Q6ZMZ3 975 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 KCTD1Q719H9 257 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 ZNF274Q96GC6 653 aaPredicted RBP21.22■□□□□ 0.99
CCDC40-213ENST00000574933 P2RX7Q99572 595 aaKnown RBP21.22■□□□□ 0.99
CCDC40-213ENST00000574933 SLF1Q9BQI6 1058 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 RNF186Q9NXI6 227 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 MTMR7Q9Y216 660 aa21.22■□□□□ 0.99
CCDC40-213ENST00000574933 SPDYE16A6NNV3 312 aaPredicted RBP21.21■□□□□ 0.99
CCDC40-213ENST00000574933 ZBTB43O43298 467 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 FLOT1O75955 427 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 FDX1P10109 184 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 STAT2P52630 851 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 HERVK_113P62684 666 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 PRPF38AQ8NAV1 312 aaKnown RBP21.21■□□□□ 0.99
CCDC40-213ENST00000574933 FANCBQ8NB91 859 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 MYL10Q9BUA6 226 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 ZFYVE28Q9HCC9 887 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 FBXO28Q9NVF7 368 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 HPS5Q9UPZ3 1129 aa21.21■□□□□ 0.99
CCDC40-213ENST00000574933 TLR2O60603 784 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 CYP2C8P10632 490 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 SMARCA1P28370 1054 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 KIF5BP33176 963 aa21.2■□□□□ 0.98
CCDC40-213ENST00000574933 GCLCP48506 637 aaPredicted RBP21.2■□□□□ 0.98
CCDC40-213ENST00000574933 CRHR2Q13324 411 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms