RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 PPP1R12BO60237 982 aaPredicted RBP15.83■□□□□ 0.12
CCDC40-209ENST00000573474 BAG4O95429 457 aaKnown RBP15.83■□□□□ 0.12
CCDC40-209ENST00000573474 NDUFB10O96000 172 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 ECE1P42892 770 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 GUCY1B3Q02153 619 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 PFKFB3Q16875 520 aaPredicted RBP15.83■□□□□ 0.12
CCDC40-209ENST00000573474 SLC35G1Q2M3R5 365 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 NOL9Q5SY16 702 aaKnown RBP15.83■□□□□ 0.12
CCDC40-209ENST00000573474 OTUD7BQ6GQQ9 843 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 CDCA5Q96FF9 252 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 RIOX1Q9H6W3 641 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 MYH4Q9Y623 1939 aa15.83■□□□□ 0.12
CCDC40-209ENST00000573474 POLR2AP24928 1970 aaKnown RBP15.83■□□□□ 0.12
CCDC40-209ENST00000573474 hCG_1642624A0A1W2PR95 340 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 CYTH3O43739 400 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 BMP3P12645 472 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 SCG2P13521 617 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 MAP3K9P80192 1104 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 RESTQ13127 1097 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 KRT40Q6A162 431 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 MCTP1Q6DN14 999 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 DLK2Q6UY11 383 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 KCTD1Q719H9 257 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.82■□□□□ 0.12
CCDC40-209ENST00000573474 ZKSCAN4Q969J2 545 aaPredicted RBP15.82■□□□□ 0.12
CCDC40-209ENST00000573474 RRP36Q96EU6 259 aaKnown RBP15.82■□□□□ 0.12
CCDC40-209ENST00000573474 WDR18Q9BV38 432 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 GLIS2Q9BZE0 524 aaPredicted RBP15.82■□□□□ 0.12
CCDC40-209ENST00000573474 UBA5Q9GZZ9 404 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 VCPKMTQ9H867 229 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 AS3MTQ9HBK9 375 aa15.82■□□□□ 0.12
CCDC40-209ENST00000573474 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.82■□□□□ 0.12
CCDC40-209ENST00000573474 PTPRAP18433 802 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 IREB2P48200 963 aaKnown RBP15.81■□□□□ 0.12
CCDC40-209ENST00000573474 PRKG1Q13976 671 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 NFKBIBQ15653 356 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 TTBK2Q6IQ55 1244 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 FERMT3Q86UX7 667 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 PIBF1Q8WXW3 757 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 CPVLQ9H3G5 476 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 VAT1LQ9HCJ6 419 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 GJB4Q9NTQ9 266 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 ISY1Q9ULR0 285 aaKnown RBP15.81■□□□□ 0.12
CCDC40-209ENST00000573474 FZD1Q9UP38 647 aa15.81■□□□□ 0.12
CCDC40-209ENST00000573474 MCM4P33991 863 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 SAFBQ15424 915 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC40-209ENST00000573474 CCDC84Q86UT8 332 aaPredicted RBP15.8■□□□□ 0.12
CCDC40-209ENST00000573474 LDHDQ86WU2 507 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 ADGRF4Q8IZF3 695 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 FAM177A1Q8N128 213 aaPredicted RBP15.8■□□□□ 0.12
CCDC40-209ENST00000573474 FEZ1Q99689 392 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 KIAA1683Q9H0B3 1180 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 SH3GLB2Q9NR46 395 aa15.8■□□□□ 0.12
CCDC40-209ENST00000573474 SEC63Q9UGP8 760 aaKnown RBP15.8■□□□□ 0.12
CCDC40-209ENST00000573474 USP17L10C9JJH3 530 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 MMP1P03956 469 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 POTEIP0CG38 1075 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 POTEJP0CG39 1038 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 USP14P54578 494 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 KIF23Q02241 960 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-209ENST00000573474 KIAA1755Q5JYT7 1200 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 BTNL9Q6UXG8 535 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 SPICE1Q8N0Z3 855 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 ZNF280CQ8ND82 737 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 PIGSQ96S52 555 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 NUP88Q99567 741 aaPredicted RBP15.79■□□□□ 0.12
CCDC40-209ENST00000573474 JMJD4Q9H9V9 463 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 VPS54Q9P1Q0 977 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 CSADQ9Y600 493 aa15.79■□□□□ 0.12
CCDC40-209ENST00000573474 ATAD5Q96QE3 1844 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 PNMA6FA0A0J9YX94 578 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 TMEM232C9JQI7 657 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 GOLGA6L22H0YM25 854 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 hCG_1984214I3L0E3 225 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 PLA2G6O60733 806 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 SLC16A2P36021 539 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 SPP2Q13103 211 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 ZYXQ15942 572 aaKnown RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 MAP3K11Q16584 847 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 FOXD4L6Q3SYB3 417 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 MAP1SQ66K74 1059 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 FOXD4L3Q6VB84 417 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 PPP1R3FQ6ZSY5 799 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 ARMC9Q7Z3E5 817 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 BRAPQ7Z569 592 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 ZNF713Q8N859 430 aaPredicted RBP15.78■□□□□ 0.12
CCDC40-209ENST00000573474 CHURC1Q8WUH1 139 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 LPAR1Q92633 364 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 MTMR8Q96EF0 704 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 PHF20Q9BVI0 1012 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 BARHL2Q9NY43 387 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 KCNJ14Q9UNX9 436 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 ZHX2Q9Y6X8 837 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 DOCK1Q14185 1865 aa15.78■□□□□ 0.12
CCDC40-209ENST00000573474 DDX11L8A8MPP1 907 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 U2AF2P26368 475 aaKnown RBP eCLIP15.77■□□□□ 0.124e-6■■□□□ 13.2
CCDC40-209ENST00000573474 CALML3P27482 149 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 BACE1P56817 501 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 NLRP5P59047 1200 aa15.77■□□□□ 0.12
CCDC40-209ENST00000573474 IKQ13123 557 aaPredicted RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms