RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 SH2D4AQ9H788 454 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 ZMYND8Q9ULU4 1186 aaPredicted RBP21.68■■□□□ 1.06
CHD3-214ENST00000572579 TACC3Q9Y6A5 838 aa21.68■■□□□ 1.06
CHD3-214ENST00000572579 VWA5AO00534 786 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 CYBAP13498 195 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 MX1P20591 662 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 PRAMEF19Q5SWL8 479 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 DPP9Q86TI2 863 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 NCAPG2Q86XI2 1143 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 NYAP2Q9P242 653 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 DDX20Q9UHI6 824 aaKnown RBP21.67■■□□□ 1.06
CHD3-214ENST00000572579 PPP1R9AQ9ULJ8 1098 aa21.67■■□□□ 1.06
CHD3-214ENST00000572579 F5H6K3 240 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 APPP05067 770 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 KLRC3Q07444 240 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 LRRC26Q2I0M4 334 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 ANKRD45Q5TZF3 282 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 OLFML2BQ68BL8 750 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 CCDC129Q6ZRS4 1044 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 MROH8Q9H579 483 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 MKNK2Q9HBH9 465 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 INCENPQ9NQS7 918 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 ZNF214Q9UL59 606 aaPredicted RBP21.66■■□□□ 1.06
CHD3-214ENST00000572579 ALPK3Q96L96 1907 aa21.66■■□□□ 1.06
CHD3-214ENST00000572579 MYH7P12883 1935 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 ERC2O15083 957 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 NDUFB10O96000 172 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 SYN1P17600 705 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 GNAT2P19087 354 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 TDO2P48775 406 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 ABRAQ8N0Z2 381 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 MKL1Q969V6 931 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 GDF15Q99988 308 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 GOPCQ9HD26 462 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 CLIP2Q9UDT6 1046 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 A0A0G2JMZ2 1700 aa21.65■■□□□ 1.06
CHD3-214ENST00000572579 PGK2P07205 417 aa21.64■■□□□ 1.05
CHD3-214ENST00000572579 HDAC1Q13547 482 aaPredicted RBP21.64■■□□□ 1.05
CHD3-214ENST00000572579 RIOX2Q8IUF8 465 aa21.64■■□□□ 1.05
CHD3-214ENST00000572579 CEP95Q96GE4 821 aa21.64■■□□□ 1.05
CHD3-214ENST00000572579 FSD1Q9BTV5 496 aa21.64■■□□□ 1.05
CHD3-214ENST00000572579 RIPK3Q9Y572 518 aa21.64■■□□□ 1.05
CHD3-214ENST00000572579 SOX1O00570 391 aaPredicted RBP21.63■■□□□ 1.05
CHD3-214ENST00000572579 RAD21O60216 631 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 CNGA1P29973 690 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 STAT3P40763 770 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 FAM47AQ5JRC9 791 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 ANO1Q5XXA6 986 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 MAML3Q96JK9 1138 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 MTMR4Q9NYA4 1195 aa21.63■■□□□ 1.05
CHD3-214ENST00000572579 GREB1LQ9C091 1923 aaPredicted RBP21.63■■□□□ 1.05
CHD3-214ENST00000572579 VPS53Q5VIR6 699 aa21.62■■□□□ 1.05
CHD3-214ENST00000572579 SLC25A27O95847 323 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 FCER1AP12319 257 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 PDE1AP54750 535 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 PPARAQ07869 468 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 ZNF792Q3KQV3 632 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 ZNF444Q8N0Y2 327 aaPredicted RBP21.61■■□□□ 1.05
CHD3-214ENST00000572579 NEDD1Q8NHV4 660 aa21.61■■□□□ 1.05
CHD3-214ENST00000572579 YTHDC1Q96MU7 727 aaKnown RBP21.61■■□□□ 1.05
CHD3-214ENST00000572579 TAL1P17542 331 aaPredicted RBP21.6■■□□□ 1.05
CHD3-214ENST00000572579 LRRC47Q8N1G4 583 aaKnown RBP21.6■■□□□ 1.05
CHD3-214ENST00000572579 SLF1Q9BQI6 1058 aa21.6■■□□□ 1.05
CHD3-214ENST00000572579 SENP6Q9GZR1 1112 aaPredicted RBP21.6■■□□□ 1.05
CHD3-214ENST00000572579 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.6■■□□□ 1.05
CHD3-214ENST00000572579 BMP8BP34820 402 aa21.59■■□□□ 1.05
CHD3-214ENST00000572579 MAGEA10P43363 369 aaPredicted RBP21.59■■□□□ 1.05
CHD3-214ENST00000572579 TFAP4Q01664 338 aa21.59■■□□□ 1.05
CHD3-214ENST00000572579 GJC2Q5T442 439 aaPredicted RBP21.59■■□□□ 1.05
CHD3-214ENST00000572579 MMP19Q99542 508 aa21.59■■□□□ 1.05
CHD3-214ENST00000572579 IL17RBQ9NRM6 502 aa21.59■■□□□ 1.05
CHD3-214ENST00000572579 PARP14Q460N5 1801 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 SEPT4O43236 478 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 MSCO60682 206 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 IGHDP01880 384 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 CTDSPL2Q05D32 466 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 LRRFIP1Q32MZ4 808 aaKnown RBP21.58■■□□□ 1.05
CHD3-214ENST00000572579 LRCH3Q96II8 777 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 FAM227BQ96M60 508 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 NACAP1Q9BZK3 213 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 NAPBQ9H115 298 aa21.58■■□□□ 1.05
CHD3-214ENST00000572579 ZNF236Q9UL36 1845 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 DNM1LO00429 736 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 NMT2O60551 498 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 TTLL1O95922 423 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 ATN1P54259 1190 aaPredicted RBP21.57■■□□□ 1.04
CHD3-214ENST00000572579 PRPF38AQ8NAV1 312 aaKnown RBP21.57■■□□□ 1.04
CHD3-214ENST00000572579 GMCL1P1Q8NEA9 526 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 EVI5LQ96CN4 794 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 PLIN4Q96Q06 1357 aa21.57■■□□□ 1.04
CHD3-214ENST00000572579 A0A1W2PPC1 479 aa21.56■■□□□ 1.04
CHD3-214ENST00000572579 SLC38A10Q9HBR0 1119 aa21.56■■□□□ 1.04
CHD3-214ENST00000572579 RAVER2Q9HCJ3 691 aaKnown RBP21.56■■□□□ 1.04
CHD3-214ENST00000572579 MYH8P13535 1937 aa21.56■■□□□ 1.04
CHD3-214ENST00000572579 DNAJC25-GNG10A0A024R161 153 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 A0A0D9SFI3 127 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 ATP2A1O14983 1001 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 ZNF865P0CJ78 1059 aaPredicted RBP21.55■■□□□ 1.04
CHD3-214ENST00000572579 PDE4BQ07343 736 aa21.55■■□□□ 1.04
CHD3-214ENST00000572579 SLFN13Q68D06 897 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms