RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 TICAM2Q86XR7 235 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 NPLOC4Q8TAT6 608 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 DIS3LQ8TF46 1054 aaKnown RBP9.33□□□□□ -0.92
CDH3-209ENST00000569080 NUP88Q99567 741 aaPredicted RBP9.33□□□□□ -0.92
CDH3-209ENST00000569080 NACAP1Q9BZK3 213 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 NAPBQ9H115 298 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 RWDD1Q9H446 243 aaPredicted RBP9.33□□□□□ -0.92
CDH3-209ENST00000569080 MKNK2Q9HBH9 465 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 GOPCQ9HD26 462 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 MTMR4Q9NYA4 1195 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 HOXC10Q9NYD6 342 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 ANAPC4Q9UJX5 808 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 ZNF214Q9UL59 606 aaPredicted RBP9.33□□□□□ -0.92
CDH3-209ENST00000569080 PPP1R9AQ9ULJ8 1098 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 SYNPO2Q9UMS6 1093 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 SUPT16HQ9Y5B9 1047 aaKnown RBP9.33□□□□□ -0.92
CDH3-209ENST00000569080 PLXNA1Q9UIW2 1896 aa9.33□□□□□ -0.92
CDH3-209ENST00000569080 F5H6K3 240 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 VWA5AO00534 786 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 SLC34A2O95436 690 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 FGRP09769 529 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 CAPN2P17655 700 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 ADORA2AP29274 412 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 NOVP48745 357 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 ATP2B2Q01814 1243 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 KLRC3Q07444 240 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 ALX1Q15699 326 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 B4GALNT3Q6L9W6 998 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 TRMT44Q8IYL2 757 aaKnown RBP9.32□□□□□ -0.92
CDH3-209ENST00000569080 LRRC47Q8N1G4 583 aaKnown RBP9.32□□□□□ -0.92
CDH3-209ENST00000569080 GMCL1P1Q8NEA9 526 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 NEDD1Q8NHV4 660 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 MKL1Q969V6 931 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 NBPF3Q9H094 633 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 HMX1Q9NP08 348 aaPredicted RBP9.32□□□□□ -0.92
CDH3-209ENST00000569080 HELLSQ9NRZ9 838 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 ZBTB47Q9UFB7 747 aaPredicted RBP9.32□□□□□ -0.92
CDH3-209ENST00000569080 OGDHLQ9ULD0 1010 aa9.32□□□□□ -0.92
CDH3-209ENST00000569080 CCDC171Q6TFL3 1326 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 ZNFX1Q9P2E3 1918 aaKnown RBP9.31□□□□□ -0.92
CDH3-209ENST00000569080 COBLO75128 1261 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 PDE4AP27815 886 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 CCND3P30281 292 aaPredicted RBP9.31□□□□□ -0.92
CDH3-209ENST00000569080 CTDSPL2Q05D32 466 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 PDE4BQ07343 736 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 NMIQ13287 307 aaPredicted RBP9.31□□□□□ -0.92
CDH3-209ENST00000569080 MCMDC2Q4G0Z9 681 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 FAM47AQ5JRC9 791 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 WDR78Q5VTH9 848 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 LHX8Q68G74 356 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 RASGRP2Q7LDG7 609 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 RIOX2Q8IUF8 465 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 CCAR1Q8IX12 1150 aaKnown RBP9.31□□□□□ -0.92
CDH3-209ENST00000569080 ABRAQ8N0Z2 381 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 ANKLE1Q8NAG6 615 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 TRPV1Q8NER1 839 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 ZNF287Q9HBT7 754 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 INCENPQ9NQS7 918 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 IL17RBQ9NRM6 502 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 LAMA2P24043 3122 aaKnown RBP9.31□□□□□ -0.92
CDH3-209ENST00000569080 LRRC37A2A6NM11 1700 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 PFASO15067 1338 aa9.31□□□□□ -0.92
CDH3-209ENST00000569080 H0YGN5 161 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 ATP2A1O14983 1001 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 ORC4O43929 436 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TTLL1O95922 423 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 FGAP02671 866 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TSPY3P0CV98 308 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TSPY8P0CW00 308 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 HSPD1P10809 573 aaKnown RBP9.3□□□□□ -0.92
CDH3-209ENST00000569080 CYBAP13498 195 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 CYP2C19P33261 490 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TFAP4Q01664 338 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 OLFML2BQ68BL8 750 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TBC1D10CQ8IV04 446 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 ZNF444Q8N0Y2 327 aaPredicted RBP9.3□□□□□ -0.92
CDH3-209ENST00000569080 PAWRQ96IZ0 340 aaKnown RBP9.3□□□□□ -0.92
CDH3-209ENST00000569080 SLF1Q9BQI6 1058 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 IL25Q9H293 177 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 MROH8Q9H579 483 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 CLIP2Q9UDT6 1046 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 IVNS1ABPQ9Y6Y0 642 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 TRIOBPQ9H2D6 2365 aa9.3□□□□□ -0.92
CDH3-209ENST00000569080 LCTP09848 1927 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 TRIM6-TRIM34B2RNG4 842 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 STRNO43815 780 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 NMT2O60551 498 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 SLC25A27O95847 323 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 TFRCP02786 760 aaKnown RBP9.29□□□□□ -0.92
CDH3-209ENST00000569080 SLC3A2P08195 630 aaKnown RBP9.29□□□□□ -0.92
CDH3-209ENST00000569080 COL6A1P12109 1028 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 GSPT1P15170 499 aaKnown RBP9.29□□□□□ -0.92
CDH3-209ENST00000569080 SDSP20132 328 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 IRX6P78412 446 aaPredicted RBP9.29□□□□□ -0.92
CDH3-209ENST00000569080 PLS1Q14651 629 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.29□□□□□ -0.92
CDH3-209ENST00000569080 NCAPG2Q86XI2 1143 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 GMCL1Q96IK5 515 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 HTATIP2Q9BUP3 242 aa9.29□□□□□ -0.92
CDH3-209ENST00000569080 TEX13BQ9BXU2 312 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms