RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 KBTBD13C9JR72 458 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 GH2P01242 217 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 SDSP20132 328 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 MAP2K5Q13163 448 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 ATXN2LQ8WWM7 1075 aaKnown RBP16.6■□□□□ 0.25
CLN3-235ENST00000568497 GAS2L1Q99501 681 aaPredicted RBP16.6■□□□□ 0.25
CLN3-235ENST00000568497 WDR18Q9BV38 432 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 OSBPL3Q9H4L5 887 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 RBPJLQ9UBG7 517 aa16.6■□□□□ 0.25
CLN3-235ENST00000568497 RLFQ13129 1914 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 DNAJB2P25686 324 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 BACE1P56817 501 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 ATP2B2Q01814 1243 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 Q3C1V9 767 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 CWC27Q6UX04 472 aaKnown RBP16.59■□□□□ 0.25
CLN3-235ENST00000568497 SLC39A5Q6ZMH5 540 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 GTF3C2Q8WUA4 911 aaPredicted RBP16.59■□□□□ 0.25
CLN3-235ENST00000568497 ASB2Q96Q27 587 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 DHX36Q9H2U1 1008 aaKnown RBP16.59■□□□□ 0.25
CLN3-235ENST00000568497 PDLIM7Q9NR12 457 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 FLRT1Q9NZU1 646 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 SERPINB13Q9UIV8 391 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 TACC3Q9Y6A5 838 aa16.59■□□□□ 0.25
CLN3-235ENST00000568497 PRDM1O75626 825 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 ZFYP08048 801 aaPredicted RBP16.58■□□□□ 0.24
CLN3-235ENST00000568497 AKR1B1P15121 316 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 TDO2P48775 406 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 GABPAQ06546 454 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 ZYXQ15942 572 aaKnown RBP16.58■□□□□ 0.24
CLN3-235ENST00000568497 C12orf60Q5U649 245 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 SH3RF1Q7Z6J0 888 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 FOXP4Q8IVH2 680 aaPredicted RBP16.58■□□□□ 0.24
CLN3-235ENST00000568497 IFNL3Q8IZI9 196 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 ARRDC4Q8NCT1 418 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 ZNF576Q9H609 170 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 ZBTB21Q9ULJ3 1066 aa16.58■□□□□ 0.24
CLN3-235ENST00000568497 TRIM43BA6NCK2 446 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 C19orf81C9J6K1 198 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 MPHOSPH10O00566 681 aaKnown RBP16.57■□□□□ 0.24
CLN3-235ENST00000568497 CYP2C19P33261 490 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 GUCY1A2P33402 732 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 CTDSPL2Q05D32 466 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 RAB3GAP1Q15042 981 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 ANO1Q5XXA6 986 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 CENPQQ7L2Z9 268 aaPredicted RBP16.57■□□□□ 0.24
CLN3-235ENST00000568497 TTC6Q86TZ1 520 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 METTL16Q86W50 562 aaKnown RBP16.57■□□□□ 0.24
CLN3-235ENST00000568497 ACER1Q8TDN7 264 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 TRIM43Q96BQ3 446 aaPredicted RBP16.57■□□□□ 0.24
CLN3-235ENST00000568497 CHMP4CQ96CF2 233 aa16.57■□□□□ 0.24
CLN3-235ENST00000568497 HERC5Q9UII4 1024 aaKnown RBP16.57■□□□□ 0.24
CLN3-235ENST00000568497 NCOR1O75376 2440 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 CDK8P49336 464 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 CCNA1P78396 465 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 MRPS5P82675 430 aaKnown RBP16.56■□□□□ 0.24
CLN3-235ENST00000568497 SEPT2Q15019 361 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 CERKLQ49MI3 558 aaPredicted RBP16.56■□□□□ 0.24
CLN3-235ENST00000568497 FERMT2Q96AC1 680 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 TIFAQ96CG3 184 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 C1QTNF1Q9BXJ1 281 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 ATP8A2Q9NTI2 1148 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 HCN4Q9Y3Q4 1203 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 IVNS1ABPQ9Y6Y0 642 aa16.56■□□□□ 0.24
CLN3-235ENST00000568497 PATL2C9JE40 543 aaKnown RBP16.55■□□□□ 0.24
CLN3-235ENST00000568497 IGSF3O75054 1194 aa16.55■□□□□ 0.24
CLN3-235ENST00000568497 HAND2P61296 217 aa16.55■□□□□ 0.24
CLN3-235ENST00000568497 CCDC85BQ15834 202 aaPredicted RBP16.55■□□□□ 0.24
CLN3-235ENST00000568497 MCMDC2Q4G0Z9 681 aa16.55■□□□□ 0.24
CLN3-235ENST00000568497 TATDN1Q6P1N9 297 aa16.55■□□□□ 0.24
CLN3-235ENST00000568497 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.54■□□□□ 0.24
CLN3-235ENST00000568497 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.54■□□□□ 0.24
CLN3-235ENST00000568497 USP17L10C9JJH3 530 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 ASNSP08243 561 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 ADCYAP1R1P41586 468 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 EPHB4P54760 987 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 SNX17Q15036 470 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 ABCB5Q2M3G0 1257 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 POTEEQ6S8J3 1075 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 CERS3Q8IU89 383 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 EHD4Q9H223 541 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 DIAPH3Q9NSV4 1193 aa16.54■□□□□ 0.24
CLN3-235ENST00000568497 SLC15A5A6NIM6 579 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 HOXC6P09630 235 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 RAG1P15918 1043 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 TLE2Q04725 743 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 TRPV1Q8NER1 839 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 NAPBQ9H115 298 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 PRDM12Q9H4Q4 367 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 HELLSQ9NRZ9 838 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 GINM1Q9NU53 330 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 MYO9BQ13459 2157 aa16.53■□□□□ 0.24
CLN3-235ENST00000568497 CCDC171Q6TFL3 1326 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 A0A1W2PRG0 241 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 CLTBP09497 229 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 HSPD1P10809 573 aaKnown RBP16.52■□□□□ 0.24
CLN3-235ENST00000568497 CYBAP13498 195 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 IGFBP4P22692 258 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 PTPREP23469 700 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 ITGB8P26012 769 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 FPGSQ05932 587 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms