RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GRB14Q14449 540 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 MFSD14CQ5VZR4 134 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 SHCBP1Q8NEM2 672 aa24.67■■□□□ 1.54
CLN3-219ENST00000565778 TFAP4Q01664 338 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 MCMDC2Q4G0Z9 681 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 FAM47AQ5JRC9 791 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 CEP95Q96GE4 821 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 MROH8Q9H579 483 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 MTMR4Q9NYA4 1195 aa24.66■■□□□ 1.54
CLN3-219ENST00000565778 IGKV6D-41A0A0C4DH26 115 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 TMEM132BQ14DG7 1078 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 VPS53Q5VIR6 699 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 TICAM2Q86XR7 235 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 NEDD1Q8NHV4 660 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 NPLOC4Q8TAT6 608 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 MKL1Q969V6 931 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 PAWRQ96IZ0 340 aaKnown RBP24.65■■□□□ 1.54
CLN3-219ENST00000565778 FAM227BQ96M60 508 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 NUP88Q99567 741 aaPredicted RBP24.65■■□□□ 1.54
CLN3-219ENST00000565778 ADAMTS5Q9UNA0 930 aa24.65■■□□□ 1.54
CLN3-219ENST00000565778 TTLL1O95922 423 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 HOXC6P09630 235 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 ADORA2AP29274 412 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 CTDSPL2Q05D32 466 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 NECAB2Q7Z6G3 386 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 PLEKHM2Q8IWE5 1019 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 FLRT1Q9NZU1 646 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 PPP1R9AQ9ULJ8 1098 aa24.64■■□□□ 1.54
CLN3-219ENST00000565778 H0YGN5 161 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 VWA5AO00534 786 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 FOXP2O15409 715 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 SLC25A27O95847 323 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 NDUFB10O96000 172 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 CCND3P30281 292 aaPredicted RBP24.63■■□□□ 1.53
CLN3-219ENST00000565778 ANKLE1Q8NAG6 615 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 INCENPQ9NQS7 918 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 SLC5A4Q9NY91 659 aa24.63■■□□□ 1.53
CLN3-219ENST00000565778 A0A0D9SFI3 127 aa24.62■■□□□ 1.53
CLN3-219ENST00000565778 FCER1AP12319 257 aa24.62■■□□□ 1.53
CLN3-219ENST00000565778 STAT3P40763 770 aa24.62■■□□□ 1.53
CLN3-219ENST00000565778 NMIQ13287 307 aaPredicted RBP24.62■■□□□ 1.53
CLN3-219ENST00000565778 NR2E3Q9Y5X4 410 aa24.62■■□□□ 1.53
CLN3-219ENST00000565778 TSPY2A6NKD2 308 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 CNGA1P29973 690 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 CYP2C19P33261 490 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 ALX1Q15699 326 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 PRPF38AQ8NAV1 312 aaKnown RBP24.61■■□□□ 1.53
CLN3-219ENST00000565778 DIS3LQ8TF46 1054 aaKnown RBP24.61■■□□□ 1.53
CLN3-219ENST00000565778 SLF1Q9BQI6 1058 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 OSBPL3Q9H4L5 887 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 OGDHLQ9ULD0 1010 aa24.61■■□□□ 1.53
CLN3-219ENST00000565778 COBLO75128 1261 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 FGAP02671 866 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 RIOX2Q8IUF8 465 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 ABRAQ8N0Z2 381 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 LRRC47Q8N1G4 583 aaKnown RBP24.6■■□□□ 1.53
CLN3-219ENST00000565778 NBPF3Q9H094 633 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 ANAPC4Q9UJX5 808 aa24.6■■□□□ 1.53
CLN3-219ENST00000565778 CTDP1Q9Y5B0 961 aaPredicted RBP24.6■■□□□ 1.53
CLN3-219ENST00000565778 EVI5O60447 810 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 SDSP20132 328 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 IRX6P78412 446 aaPredicted RBP24.59■■□□□ 1.53
CLN3-219ENST00000565778 PPP4R3BQ5MIZ7 849 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 SLFN13Q68D06 897 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 SYNPO2Q9UMS6 1093 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.59■■□□□ 1.53
CLN3-219ENST00000565778 RLFQ13129 1914 aa24.59■■□□□ 1.53
CLN3-219ENST00000565778 RANBP6O60518 1105 aaKnown RBP24.58■■□□□ 1.53
CLN3-219ENST00000565778 ZBED4O75132 1171 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 HSPD1P10809 573 aaKnown RBP24.58■■□□□ 1.53
CLN3-219ENST00000565778 SLC4A3P48751 1232 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 OLFML2BQ68BL8 750 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 LHX8Q68G74 356 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 GMCL1P1Q8NEA9 526 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 KIFC2Q96AC6 838 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 MMP19Q99542 508 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 TOMM22Q9NS69 142 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 FEM1BQ9UK73 627 aa24.58■■□□□ 1.53
CLN3-219ENST00000565778 ZNF214Q9UL59 606 aaPredicted RBP24.58■■□□□ 1.53
CLN3-219ENST00000565778 ISY1Q9ULR0 285 aaKnown RBP24.58■■□□□ 1.53
CLN3-219ENST00000565778 MFAP1P55081 439 aaKnown RBP24.57■■□□□ 1.52
CLN3-219ENST00000565778 KCTD2Q14681 263 aa24.57■■□□□ 1.52
CLN3-219ENST00000565778 ZNF589Q86UQ0 364 aaPredicted RBP24.57■■□□□ 1.52
CLN3-219ENST00000565778 REPS2Q8NFH8 660 aa24.57■■□□□ 1.52
CLN3-219ENST00000565778 STX8Q9UNK0 236 aa24.57■■□□□ 1.52
CLN3-219ENST00000565778 BMP3P12645 472 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 COPB2P35606 906 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 HABP4Q5JVS0 413 aaKnown RBP24.56■■□□□ 1.52
CLN3-219ENST00000565778 CPXCR1Q8N123 301 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 CHMP4CQ96CF2 233 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 C11orf49Q9H6J7 331 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 COLQQ9Y215 455 aaPredicted RBP24.56■■□□□ 1.52
CLN3-219ENST00000565778 TACC3Q9Y6A5 838 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 GREB1LQ9C091 1923 aaPredicted RBP24.56■■□□□ 1.52
CLN3-219ENST00000565778 CCDC171Q6TFL3 1326 aa24.56■■□□□ 1.52
CLN3-219ENST00000565778 PLIN4Q96Q06 1357 aa24.55■■□□□ 1.52
CLN3-219ENST00000565778 MNX1P50219 401 aaPredicted RBP24.55■■□□□ 1.52
CLN3-219ENST00000565778 RRP12Q5JTH9 1297 aaKnown RBP24.55■■□□□ 1.52
CLN3-219ENST00000565778 TEX13BQ9BXU2 312 aa24.55■■□□□ 1.52
CLN3-219ENST00000565778 IL17RBQ9NRM6 502 aa24.55■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms