RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 FBXO28Q9NVF7 368 aa26.79■■□□□ 1.88
CLN3-215ENST00000565236 FLRT1Q9NZU1 646 aa26.79■■□□□ 1.88
CLN3-215ENST00000565236 ADORA2AP29274 412 aa26.78■■□□□ 1.88
CLN3-215ENST00000565236 PDE4BQ07343 736 aa26.78■■□□□ 1.88
CLN3-215ENST00000565236 RWDD1Q9H446 243 aaPredicted RBP26.78■■□□□ 1.88
CLN3-215ENST00000565236 CLIP2Q9UDT6 1046 aa26.78■■□□□ 1.88
CLN3-215ENST00000565236 ADAMTS5Q9UNA0 930 aa26.78■■□□□ 1.88
CLN3-215ENST00000565236 TMEM132BQ14DG7 1078 aa26.77■■□□□ 1.88
CLN3-215ENST00000565236 SLC5A4Q9NY91 659 aa26.77■■□□□ 1.88
CLN3-215ENST00000565236 A0A0G2JMZ2 1700 aa26.76■■□□□ 1.88
CLN3-215ENST00000565236 F5H6K3 240 aa26.76■■□□□ 1.87
CLN3-215ENST00000565236 SLC25A27O95847 323 aa26.76■■□□□ 1.87
CLN3-215ENST00000565236 KLRC3Q07444 240 aa26.76■■□□□ 1.87
CLN3-215ENST00000565236 C11orf49Q9H6J7 331 aa26.76■■□□□ 1.87
CLN3-215ENST00000565236 PPP1R9AQ9ULJ8 1098 aa26.76■■□□□ 1.87
CLN3-215ENST00000565236 GREB1LQ9C091 1923 aaPredicted RBP26.76■■□□□ 1.87
CLN3-215ENST00000565236 IGKV6D-41A0A0C4DH26 115 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 VWA5AO00534 786 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 CNGA1P29973 690 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 CYP2C19P33261 490 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 MNX1P50219 401 aaPredicted RBP26.75■■□□□ 1.87
CLN3-215ENST00000565236 PPARAQ07869 468 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 LHX8Q68G74 356 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 CHRDL2Q6WN34 429 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 CCDC129Q6ZRS4 1044 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 ABRAQ8N0Z2 381 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 NUP88Q99567 741 aaPredicted RBP26.75■■□□□ 1.87
CLN3-215ENST00000565236 LNPKQ9C0E8 428 aa26.75■■□□□ 1.87
CLN3-215ENST00000565236 TSPY3P0CV98 308 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 TSPY8P0CW00 308 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 FCER1AP12319 257 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 MKL1Q969V6 931 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 CEP95Q96GE4 821 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 MTMR4Q9NYA4 1195 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 PARP14Q460N5 1801 aa26.74■■□□□ 1.87
CLN3-215ENST00000565236 COBLO75128 1261 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 TTLL1O95922 423 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 NDUFB10O96000 172 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 STAT3P40763 770 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 OLFML2BQ68BL8 750 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 B4GALNT3Q6L9W6 998 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 RIOX2Q8IUF8 465 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 NEDD1Q8NHV4 660 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 SLF1Q9BQI6 1058 aa26.73■■□□□ 1.87
CLN3-215ENST00000565236 TFAP4Q01664 338 aa26.72■■□□□ 1.87
CLN3-215ENST00000565236 SMC5Q8IY18 1101 aa26.72■■□□□ 1.87
CLN3-215ENST00000565236 HELLSQ9NRZ9 838 aa26.72■■□□□ 1.87
CLN3-215ENST00000565236 MSCO60682 206 aa26.71■■□□□ 1.87
CLN3-215ENST00000565236 FAM47AQ5JRC9 791 aa26.71■■□□□ 1.87
CLN3-215ENST00000565236 PRPF38AQ8NAV1 312 aaKnown RBP26.71■■□□□ 1.87
CLN3-215ENST00000565236 EXOC6Q8TAG9 804 aa26.71■■□□□ 1.87
CLN3-215ENST00000565236 DDX20Q9UHI6 824 aaKnown RBP26.71■■□□□ 1.87
CLN3-215ENST00000565236 SYNPO2Q9UMS6 1093 aa26.71■■□□□ 1.87
CLN3-215ENST00000565236 COL11A1P12107 1806 aaPredicted RBP26.71■■□□□ 1.87
CLN3-215ENST00000565236 ZNF236Q9UL36 1845 aa26.7■■□□□ 1.87
CLN3-215ENST00000565236 TRIM6-TRIM34B2RNG4 842 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 IGHA2P01877 340 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 TICAM2Q86XR7 235 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 MMP19Q99542 508 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 ZNF214Q9UL59 606 aaPredicted RBP26.7■■□□□ 1.86
CLN3-215ENST00000565236 MYH4Q9Y623 1939 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 TRIOBPQ9H2D6 2365 aa26.7■■□□□ 1.86
CLN3-215ENST00000565236 FOXP2O15409 715 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 COPB2P35606 906 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 CTDSPL2Q05D32 466 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 KCTD2Q14681 263 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 C7orf61Q8IZ16 206 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 TRPV1Q8NER1 839 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 REPS2Q8NFH8 660 aa26.69■■□□□ 1.86
CLN3-215ENST00000565236 CTDP1Q9Y5B0 961 aaPredicted RBP26.69■■□□□ 1.86
CLN3-215ENST00000565236 ZNFX1Q9P2E3 1918 aaKnown RBP26.69■■□□□ 1.86
CLN3-215ENST00000565236 IGHDP01880 384 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 CYBAP13498 195 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 MCMDC2Q4G0Z9 681 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 VPS53Q5VIR6 699 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 CHD1LQ86WJ1 897 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 LRRC47Q8N1G4 583 aaKnown RBP26.68■■□□□ 1.86
CLN3-215ENST00000565236 GMCL1P1Q8NEA9 526 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 FAM227BQ96M60 508 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 RBM27Q9P2N5 1060 aaKnown RBP26.68■■□□□ 1.86
CLN3-215ENST00000565236 PLIN4Q96Q06 1357 aa26.68■■□□□ 1.86
CLN3-215ENST00000565236 ZBED4O75132 1171 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 PPP4R3BQ5MIZ7 849 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 RILPL2Q969X0 211 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 MAML3Q96JK9 1138 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 TEX13BQ9BXU2 312 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 FEM1BQ9UK73 627 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 ALPK3Q96L96 1907 aa26.67■■□□□ 1.86
CLN3-215ENST00000565236 PFASO15067 1338 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 TSPY2A6NKD2 308 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 COL6A1P12109 1028 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 FXR1P51114 621 aaKnown RBP eCLIP26.66■■□□□ 1.86
CLN3-215ENST00000565236 ALX1Q15699 326 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 SLFN13Q68D06 897 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 KIFC2Q96AC6 838 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 INCENPQ9NQS7 918 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 ANAPC4Q9UJX5 808 aa26.66■■□□□ 1.86
CLN3-215ENST00000565236 DDX52Q9Y2R4 599 aaKnown RBP eCLIP26.66■■□□□ 1.86
CLN3-215ENST00000565236 A0A0D9SFI3 127 aa26.65■■□□□ 1.86
CLN3-215ENST00000565236 PGK2P07205 417 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms