RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 DAGLAQ9Y4D2 1042 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 PLEKHH1Q9ULM0 1364 aa7.56□□□□□ -1.2
VPS35-204ENST00000563884 QRICH2Q9H0J4 1663 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 AOC2O75106 756 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 GADD45BO75293 160 aaPredicted RBP7.55□□□□□ -1.2
VPS35-204ENST00000563884 ZC3H6P61129 1189 aaKnown RBP7.55□□□□□ -1.2
VPS35-204ENST00000563884 HTRA3P83110 453 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 AP3B2Q13367 1082 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 SMC1BQ8NDV3 1235 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 DCTN4Q9UJW0 460 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 IVNS1ABPQ9Y6Y0 642 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 ABCC6O95255 1503 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 PXDNLA1KZ92 1463 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 ARFGEF1Q9Y6D6 1849 aa7.55□□□□□ -1.2
VPS35-204ENST00000563884 TMC7Q7Z402 723 aa7.54□□□□□ -1.2
VPS35-204ENST00000563884 WDR18Q9BV38 432 aa7.54□□□□□ -1.2
VPS35-204ENST00000563884 NIF3L1Q9GZT8 377 aa7.54□□□□□ -1.2
VPS35-204ENST00000563884 ZC3H7BQ9UGR2 993 aaKnown RBP7.54□□□□□ -1.2
VPS35-204ENST00000563884 ROCK1Q13464 1354 aa7.54□□□□□ -1.2
VPS35-204ENST00000563884 RGPD5Q99666 1765 aa7.54□□□□□ -1.2
VPS35-204ENST00000563884 KDM2BQ8NHM5 1336 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 EIF1AYO14602 144 aaKnown RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 DYNC1LI2O43237 492 aaPredicted RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 ZNF157P51786 506 aaPredicted RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 PTPN12Q05209 780 aaKnown RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 DSC3Q14574 896 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 ZNF827Q17R98 1081 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 NFXL1Q6ZNB6 911 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 NGDNQ8NEJ9 315 aaKnown RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 CCDC74AQ96AQ1 378 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 KRTAP9-9Q9BYP9 154 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 KRTAP9-4Q9BYQ2 154 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 ZC3H12CQ9C0D7 883 aaKnown RBP7.53□□□□□ -1.2
VPS35-204ENST00000563884 ABCB6Q9NP58 842 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 TFCP2L1Q9NZI6 479 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 COL18A1P39060 1754 aa7.53□□□□□ -1.2
VPS35-204ENST00000563884 PNPLA7Q6ZV29 1317 aa7.52□□□□□ -1.2
VPS35-204ENST00000563884 KIF13BQ9NQT8 1826 aa7.52□□□□□ -1.2
VPS35-204ENST00000563884 C5P01031 1676 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 TMEM238LA0A1B0GVL6 79 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 PATL2C9JE40 543 aaKnown RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 LIG1P18858 919 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 HMGB2P26583 209 aaKnown RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 CTCFP49711 727 aaPredicted RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 RGS19P49795 217 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 PTF1AQ7RTS3 328 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 MARCH10Q8NA82 808 aaPredicted RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 AGBL5Q8NDL9 886 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 ABHD8Q96I13 439 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 CSRNP1Q96S65 589 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 GSX1Q9H4S2 264 aaPredicted RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 PIDD1Q9HB75 910 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 NMRK2Q9NPI5 230 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 C1GALT1Q9NS00 363 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 BIN2Q9UBW5 565 aaPredicted RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 PPP1R9AQ9ULJ8 1098 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 TRAK1Q9UPV9 953 aa7.52□□□□□ -1.21
VPS35-204ENST00000563884 VIRMAQ69YN4 1812 aaKnown RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 TNRC18O15417 2968 aaPredicted RBP7.52□□□□□ -1.21
VPS35-204ENST00000563884 BRCA1P38398 1863 aaKnown RBP7.51□□□□□ -1.21
VPS35-204ENST00000563884 USP54Q70EL1 1684 aa7.51□□□□□ -1.21
VPS35-204ENST00000563884 PRPF40BQ6NWY9 871 aaKnown RBP7.51□□□□□ -1.21
VPS35-204ENST00000563884 OGFOD3Q6PK18 319 aa7.51□□□□□ -1.21
VPS35-204ENST00000563884 SEZ6L2Q6UXD5 910 aa7.51□□□□□ -1.21
VPS35-204ENST00000563884 USP6P35125 1406 aa7.51□□□□□ -1.21
VPS35-204ENST00000563884 IGSF1Q8N6C5 1336 aa7.51□□□□□ -1.21
VPS35-204ENST00000563884 TREHO43280 583 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 SLFN14P0C7P3 912 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 CYP27C1Q4G0S4 372 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 RPS26P11Q5JNZ5 115 aaPredicted RBP7.5□□□□□ -1.21
VPS35-204ENST00000563884 TOM1L2Q6ZVM7 507 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 CBLL1Q75N03 491 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 ASIC4Q96FT7 647 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 HIRIP3Q9BW71 556 aaPredicted RBP7.5□□□□□ -1.21
VPS35-204ENST00000563884 CCDC86Q9H6F5 360 aaKnown RBP7.5□□□□□ -1.21
VPS35-204ENST00000563884 PAK6Q9NQU5 681 aaPredicted RBP7.5□□□□□ -1.21
VPS35-204ENST00000563884 SLC5A6Q9Y289 635 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 PIK3C2GO75747 1445 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 TAF1LQ8IZX4 1826 aa7.5□□□□□ -1.21
VPS35-204ENST00000563884 SBF1O95248 1867 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 N4BP2Q86UW6 1770 aaPredicted RBP7.49□□□□□ -1.21
VPS35-204ENST00000563884 EXOC5O00471 708 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 TMPRSS2O15393 492 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 HNRNPUQ00839 825 aaKnown RBP eCLIP7.49□□□□□ -1.21
VPS35-204ENST00000563884 FAAP100Q0VG06 881 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 WDR89Q96FK6 387 aaPredicted RBP7.49□□□□□ -1.21
VPS35-204ENST00000563884 ATXN3LQ9H3M9 355 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 SYNGAP1Q96PV0 1343 aa7.49□□□□□ -1.21
VPS35-204ENST00000563884 CCDC85CA6NKD9 419 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 ID3Q02535 119 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 CDK5R2Q13319 367 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 FAM50AQ14320 339 aaKnown RBP7.48□□□□□ -1.21
VPS35-204ENST00000563884 GRM2Q14416 872 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 COL19A1Q14993 1142 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 DTHD1Q6ZMT9 781 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 EPS8L3Q8TE67 593 aaKnown RBP7.48□□□□□ -1.21
VPS35-204ENST00000563884 DOT1LQ8TEK3 1739 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 CRIM1Q9NZV1 1036 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 WDR17Q8IZU2 1322 aa7.48□□□□□ -1.21
VPS35-204ENST00000563884 KCPQ6ZWJ8 1503 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms