RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 MYH7P12883 1935 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 SYNRGQ9UMZ2 1314 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 IGSF3O75054 1194 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 PGK2P07205 417 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 COG2Q14746 738 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 ANKRD33Q7Z3H0 272 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 KLHDC9Q8NEP7 349 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 SYMPKQ92797 1274 aaKnown RBP12.66□□□□□ -0.38
SF3B3-204ENST00000563739 VWCEQ96DN2 955 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 FGD4Q96M96 766 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 PBX4Q9BYU1 374 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 CCDC8Q9H0W5 538 aaPredicted RBP12.66□□□□□ -0.38
SF3B3-204ENST00000563739 ZNF576Q9H609 170 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 XPNPEP3Q9NQH7 507 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 FBXO28Q9NVF7 368 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 NOP58Q9Y2X3 529 aaKnown RBP12.66□□□□□ -0.38
SF3B3-204ENST00000563739 TACC3Q9Y6A5 838 aa12.66□□□□□ -0.38
SF3B3-204ENST00000563739 PIEZO1Q92508 2521 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 TCRBV5S4A2TA0A5A2 114 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 PQBP1O60828 265 aaKnown RBP12.65□□□□□ -0.38
SF3B3-204ENST00000563739 IDH1O75874 414 aaKnown RBP12.65□□□□□ -0.38
SF3B3-204ENST00000563739 MYCNP04198 464 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-204ENST00000563739 AKR1B1P15121 316 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 USP5P45974 858 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 FPGSQ05932 587 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 TMEM240Q5SV17 173 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 ATF7IPQ6VMQ6 1270 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 C1orf115Q9H7X2 142 aa12.65□□□□□ -0.38
SF3B3-204ENST00000563739 ZNF214Q9UL59 606 aaPredicted RBP12.65□□□□□ -0.38
SF3B3-204ENST00000563739 PTPRSQ13332 1948 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 CTAGE5O15320 804 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 BCAR3O75815 825 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 SLFNL1Q499Z3 407 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 CCDC158Q5M9N0 1113 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 TMEM57Q8N5G2 664 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 TIFAQ96CG3 184 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 DYNLL2Q96FJ2 89 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 TINF2Q9BSI4 451 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 TANGO6Q9C0B7 1094 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 PRDM12Q9H4Q4 367 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 MROH8Q9H579 483 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 FOXD4L1Q9NU39 408 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 NRBP1Q9UHY1 535 aa12.64□□□□□ -0.39
SF3B3-204ENST00000563739 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 SNAI1O95863 264 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 CHGBP05060 677 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 RAG1P15918 1043 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 CDK7P50613 346 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 ACLYP53396 1101 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 ATP8B2P98198 1209 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 TTC6Q86TZ1 520 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 NCAPG2Q86XI2 1143 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 SPICE1Q8N0Z3 855 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 LCORLQ8N3X6 602 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 MB21D1Q8N884 522 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 ADAMTS19Q8TE59 1207 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 SDR42E1Q8WUS8 393 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 CLUAP1Q96AJ1 413 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 TOX2Q96NM4 488 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 NECAB3Q96P71 396 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 ASB2Q96Q27 587 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 VCPKMTQ9H867 229 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 DCP1AQ9NPI6 582 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 CXXC1Q9P0U4 656 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 YBX2Q9Y2T7 364 aaKnown RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 TMX2Q9Y320 296 aa12.63□□□□□ -0.39
SF3B3-204ENST00000563739 COL4A4P53420 1690 aaPredicted RBP12.63□□□□□ -0.39
SF3B3-204ENST00000563739 TIMP1P01033 207 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 RARBP10826 455 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 PDE6AP16499 860 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 AKNAD1Q5T1N1 836 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 RIOX2Q8IUF8 465 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.62□□□□□ -0.39
SF3B3-204ENST00000563739 KATNBL1Q9H079 304 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 CABP5Q9NP86 173 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 TMEM39AQ9NV64 488 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 HOXC10Q9NYD6 342 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 SCN5AQ14524 2016 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 MYH4Q9Y623 1939 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 UMODL1Q5DID0 1318 aa12.62□□□□□ -0.39
SF3B3-204ENST00000563739 DNAJC25-GNG10A0A024R161 153 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 CYP2D7A0A087X1C5 515 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 FLOT1O75955 427 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 RLBP1P12271 317 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 CSF2RAP15509 400 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 CST5P28325 142 aaPredicted RBP12.61□□□□□ -0.39
SF3B3-204ENST00000563739 PLS1Q14651 629 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 MFSD5Q6N075 450 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 TMEM179Q6ZVK1 233 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 ATXN2LQ8WWM7 1075 aaKnown RBP12.61□□□□□ -0.39
SF3B3-204ENST00000563739 THEGQ9P2T0 379 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 DIS3Q9Y2L1 958 aaKnown RBP12.61□□□□□ -0.39
SF3B3-204ENST00000563739 PRRC2BQ5JSZ5 2229 aaKnown RBP12.61□□□□□ -0.39
SF3B3-204ENST00000563739 ASTN1O14525 1302 aa12.61□□□□□ -0.39
SF3B3-204ENST00000563739 VWA5AO00534 786 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 WDR46O15213 610 aaKnown RBP12.6□□□□□ -0.39
SF3B3-204ENST00000563739 PRKAB2O43741 272 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 SURF6O75683 361 aaKnown RBP12.6□□□□□ -0.39
SF3B3-204ENST00000563739 ACRP10323 421 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms