RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 C12orf60Q5U649 245 aa22.82■■□□□ 1.24
VPS35-202ENST00000561713 SAMD1Q6SPF0 538 aaPredicted RBP22.82■■□□□ 1.24
VPS35-202ENST00000561713 SLC39A5Q6ZMH5 540 aa22.82■■□□□ 1.24
VPS35-202ENST00000561713 STK11IPQ8N1F8 1099 aa22.82■■□□□ 1.24
VPS35-202ENST00000561713 COL25A1Q9BXS0 654 aaPredicted RBP22.82■■□□□ 1.24
VPS35-202ENST00000561713 PCDHB15Q9Y5E8 787 aa22.82■■□□□ 1.24
VPS35-202ENST00000561713 SPTBN5Q9NRC6 3674 aaKnown RBP22.82■■□□□ 1.24
VPS35-202ENST00000561713 LTBP2Q14767 1821 aa22.81■■□□□ 1.24
VPS35-202ENST00000561713 KBTBD13C9JR72 458 aa22.81■■□□□ 1.24
VPS35-202ENST00000561713 MYCNP04198 464 aaPredicted RBP22.81■■□□□ 1.24
VPS35-202ENST00000561713 PRAMEF19Q5SWL8 479 aa22.81■■□□□ 1.24
VPS35-202ENST00000561713 PHF6Q8IWS0 365 aaKnown RBP eCLIP22.81■■□□□ 1.24
VPS35-202ENST00000561713 SHCBP1Q8NEM2 672 aa22.81■■□□□ 1.24
VPS35-202ENST00000561713 OTUD7AQ8TE49 926 aaPredicted RBP22.81■■□□□ 1.24
VPS35-202ENST00000561713 PLXNA1Q9UIW2 1896 aa22.81■■□□□ 1.24
VPS35-202ENST00000561713 SEPT4O43236 478 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 PLS1Q14651 629 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 SHHQ15465 462 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 ZSCAN25Q6NSZ9 544 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 C16orf86Q6ZW13 317 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 SIAH1Q8IUQ4 282 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 AMOTL1Q8IY63 956 aa22.8■■□□□ 1.24
VPS35-202ENST00000561713 PRDM5Q9NQX1 630 aaPredicted RBP22.8■■□□□ 1.24
VPS35-202ENST00000561713 DSG3P32926 999 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 TRIM60Q495X7 471 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 C9orf50Q5SZB4 431 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 CTR9Q6PD62 1173 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 NCAPG2Q86XI2 1143 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 KBTBD3Q8NAB2 608 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 DDRGK1Q96HY6 314 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 GPATCH3Q96I76 525 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 ARHGEF10LQ9HCE6 1279 aa22.79■■□□□ 1.24
VPS35-202ENST00000561713 FLOT1O75955 427 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 ADCYAP1R1P41586 468 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 ZNF697Q5TEC3 545 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 MB21D1Q8N884 522 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 BADQ92934 168 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 OSBP2Q969R2 916 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 FERMT2Q96AC1 680 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 ATG4CQ96DT6 458 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 MROH8Q9H579 483 aa22.78■■□□□ 1.24
VPS35-202ENST00000561713 M0R2C6 588 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 RRP1P56182 461 aaKnown RBP22.77■■□□□ 1.24
VPS35-202ENST00000561713 SNX17Q15036 470 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 LRRC41Q15345 812 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 SH3RF1Q7Z6J0 888 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 MAML3Q96JK9 1138 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 STRBPQ96SI9 672 aaKnown RBP22.77■■□□□ 1.24
VPS35-202ENST00000561713 VCPKMTQ9H867 229 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 EPB41L4AQ9HCS5 686 aaPredicted RBP22.77■■□□□ 1.24
VPS35-202ENST00000561713 SLC5A4Q9NY91 659 aa22.77■■□□□ 1.24
VPS35-202ENST00000561713 ARPP21Q9UBL0 812 aaPredicted RBP22.77■■□□□ 1.24
VPS35-202ENST00000561713 TRIM43BA6NCK2 446 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 EEF2P13639 858 aaKnown RBP22.76■■□□□ 1.23
VPS35-202ENST00000561713 FAM47AQ5JRC9 791 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 ABRAQ8N0Z2 381 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 APPBP2Q92624 585 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 TRIM43Q96BQ3 446 aaPredicted RBP22.76■■□□□ 1.23
VPS35-202ENST00000561713 CDX2Q99626 313 aaPredicted RBP22.76■■□□□ 1.23
VPS35-202ENST00000561713 PDLIM7Q9NR12 457 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 TMX2Q9Y320 296 aa22.76■■□□□ 1.23
VPS35-202ENST00000561713 GSG1L2A8MUP6 293 aa22.75■■□□□ 1.23
VPS35-202ENST00000561713 RAD21O60216 631 aa22.75■■□□□ 1.23
VPS35-202ENST00000561713 SEMA6BQ9H3T3 888 aa22.75■■□□□ 1.23
VPS35-202ENST00000561713 FBXO28Q9NVF7 368 aa22.75■■□□□ 1.23
VPS35-202ENST00000561713 ROBO3Q96MS0 1386 aa22.75■■□□□ 1.23
VPS35-202ENST00000561713 MINDY4BA8MYZ0 360 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 RNF113AO15541 343 aaKnown RBP22.74■■□□□ 1.23
VPS35-202ENST00000561713 GPAA1O43292 621 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 FCER1AP12319 257 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 TMEM132BQ14DG7 1078 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 CCDC17Q96LX7 622 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 CRBNQ96SW2 442 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 SH2D4AQ9H788 454 aa22.74■■□□□ 1.23
VPS35-202ENST00000561713 PI4K2BQ8TCG2 481 aa22.73■■□□□ 1.23
VPS35-202ENST00000561713 YTHDC1Q96MU7 727 aaKnown RBP22.73■■□□□ 1.23
VPS35-202ENST00000561713 SEC62Q99442 399 aaKnown RBP22.73■■□□□ 1.23
VPS35-202ENST00000561713 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.73■■□□□ 1.23
VPS35-202ENST00000561713 WDR46O15213 610 aaKnown RBP22.72■■□□□ 1.23
VPS35-202ENST00000561713 PGK2P07205 417 aa22.72■■□□□ 1.23
VPS35-202ENST00000561713 RASA1P20936 1047 aa22.72■■□□□ 1.23
VPS35-202ENST00000561713 TLE2Q04725 743 aa22.72■■□□□ 1.23
VPS35-202ENST00000561713 C1orf53Q5VUE5 145 aa22.72■■□□□ 1.23
VPS35-202ENST00000561713 ITGB8P26012 769 aa22.71■■□□□ 1.23
VPS35-202ENST00000561713 TDO2P48775 406 aa22.71■■□□□ 1.23
VPS35-202ENST00000561713 FAM83BQ5T0W9 1011 aa22.71■■□□□ 1.23
VPS35-202ENST00000561713 NUP88Q99567 741 aaPredicted RBP22.71■■□□□ 1.23
VPS35-202ENST00000561713 TTYH1Q9H313 450 aaPredicted RBP22.71■■□□□ 1.23
VPS35-202ENST00000561713 XPNPEP3Q9NQH7 507 aa22.71■■□□□ 1.23
VPS35-202ENST00000561713 PHF24Q9UPV7 400 aa22.71■■□□□ 1.23
VPS35-202ENST00000561713 PRDM1O75626 825 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 SLC25A27O95847 323 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 TAL1P17542 331 aaPredicted RBP22.7■■□□□ 1.22
VPS35-202ENST00000561713 SMAD3P84022 425 aaKnown RBP22.7■■□□□ 1.22
VPS35-202ENST00000561713 MMP19Q99542 508 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 FSD1Q9BTV5 496 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 KANSL2Q9H9L4 492 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 ADAMTS5Q9UNA0 930 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 MCM3APO60318 1980 aa22.7■■□□□ 1.22
VPS35-202ENST00000561713 SMCHD1A6NHR9 2005 aa22.7■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms