RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 LRCH3Q96II8 777 aa14□□□□□ -0.17
USP3-220ENST00000561381 VCPKMTQ9H867 229 aa14□□□□□ -0.17
USP3-220ENST00000561381 ARHGEF10LQ9HCE6 1279 aa14□□□□□ -0.17
USP3-220ENST00000561381 FRMPD3Q5JV73 1810 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 A0A0G2JMZ2 1700 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 A0A1W2PPC1 479 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 COBLO75128 1261 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 EEF2P13639 858 aaKnown RBP13.99□□□□□ -0.17
USP3-220ENST00000561381 CNGA1P29973 690 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 MAGEA10P43363 369 aaPredicted RBP13.99□□□□□ -0.17
USP3-220ENST00000561381 PLS1Q14651 629 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 DPP9Q86TI2 863 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 STK11IPQ8N1F8 1099 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 LPAR1Q92633 364 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 CCDC17Q96LX7 622 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 ECHDC1Q9NTX5 307 aa13.99□□□□□ -0.17
USP3-220ENST00000561381 DDX20Q9UHI6 824 aaKnown RBP13.99□□□□□ -0.17
USP3-220ENST00000561381 LAMA3Q16787 3333 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 CYBAP13498 195 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 ZSCAN25Q6NSZ9 544 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 AMOTL1Q8IY63 956 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 SHCBP1Q8NEM2 672 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 DDRGK1Q96HY6 314 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 STRBPQ96SI9 672 aaKnown RBP13.98□□□□□ -0.17
USP3-220ENST00000561381 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.98□□□□□ -0.17
USP3-220ENST00000561381 DCTPP1Q9H773 170 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 FBXO28Q9NVF7 368 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 TRPC6Q9Y210 931 aa13.98□□□□□ -0.17
USP3-220ENST00000561381 PARP14Q460N5 1801 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 BMP8BP34820 402 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 ATN1P54259 1190 aaPredicted RBP13.97□□□□□ -0.17
USP3-220ENST00000561381 TMEM132BQ14DG7 1078 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 ANO1Q5XXA6 986 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 NCAPG2Q86XI2 1143 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 MB21D1Q8N884 522 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 OSBP2Q969R2 916 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 SH2D4AQ9H788 454 aa13.97□□□□□ -0.17
USP3-220ENST00000561381 GSG1L2A8MUP6 293 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 WDR46O15213 610 aaKnown RBP13.96□□□□□ -0.17
USP3-220ENST00000561381 STRNO43815 780 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 RAD21O60216 631 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 PRAMEF19Q5SWL8 479 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 OLFML2BQ68BL8 750 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 KBTBD3Q8NAB2 608 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 FAM212AQ96EL1 285 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 SENP6Q9GZR1 1112 aaPredicted RBP13.96□□□□□ -0.17
USP3-220ENST00000561381 KANSL2Q9H9L4 492 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 ZNF236Q9UL36 1845 aa13.96□□□□□ -0.17
USP3-220ENST00000561381 COL11A1P12107 1806 aaPredicted RBP13.95□□□□□ -0.18
USP3-220ENST00000561381 MSCO60682 206 aa13.95□□□□□ -0.18
USP3-220ENST00000561381 FAM83BQ5T0W9 1011 aa13.95□□□□□ -0.18
USP3-220ENST00000561381 GJC2Q5T442 439 aaPredicted RBP13.95□□□□□ -0.18
USP3-220ENST00000561381 APPBP2Q92624 585 aa13.95□□□□□ -0.18
USP3-220ENST00000561381 MROH8Q9H579 483 aa13.95□□□□□ -0.18
USP3-220ENST00000561381 EPB41L4AQ9HCS5 686 aaPredicted RBP13.95□□□□□ -0.18
USP3-220ENST00000561381 ARPP21Q9UBL0 812 aaPredicted RBP13.95□□□□□ -0.18
USP3-220ENST00000561381 ADAMTS5Q9UNA0 930 aa13.95□□□□□ -0.18
USP3-220ENST00000561381 MINDY4BA8MYZ0 360 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 M0R2C6 588 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 DNM1LO00429 736 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 RNF113AO15541 343 aaKnown RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 RASA1P20936 1047 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 MDM2Q00987 491 aaPredicted RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 SBK1Q52WX2 424 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 ABRAQ8N0Z2 381 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 OTUD7AQ8TE49 926 aaPredicted RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 GPATCH3Q96I76 525 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 MAML3Q96JK9 1138 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 NUP88Q99567 741 aaPredicted RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 UBE2OQ9C0C9 1292 aaKnown RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 GOPCQ9HD26 462 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 PPP1R9AQ9ULJ8 1098 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 PCDHB15Q9Y5E8 787 aa13.94□□□□□ -0.18
USP3-220ENST00000561381 GREB1LQ9C091 1923 aaPredicted RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 ZNFX1Q9P2E3 1918 aaKnown RBP13.94□□□□□ -0.18
USP3-220ENST00000561381 VWA5AO00534 786 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 GPAA1O43292 621 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 PGK2P07205 417 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 FCER1AP12319 257 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 TIE1P35590 1138 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 TDHQ8IZJ6 230 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 REPS2Q8NFH8 660 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 MMP19Q99542 508 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 MKNK2Q9HBH9 465 aa13.93□□□□□ -0.18
USP3-220ENST00000561381 BMP2KQ9NSY1 1161 aaPredicted RBP13.93□□□□□ -0.18
USP3-220ENST00000561381 ZNF214Q9UL59 606 aaPredicted RBP13.93□□□□□ -0.18
USP3-220ENST00000561381 SEPT4O43236 478 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 PRDM1O75626 825 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 SLC25A27O95847 323 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 GIMAP6Q6P9H5 292 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 RIOX2Q8IUF8 465 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 SEC62Q99442 399 aaKnown RBP13.92□□□□□ -0.18
USP3-220ENST00000561381 SLC5A4Q9NY91 659 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 ROBO3Q96MS0 1386 aa13.92□□□□□ -0.18
USP3-220ENST00000561381 SMCHD1A6NHR9 2005 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 F5H6K3 240 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 NDUFB10O96000 172 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 APPP05067 770 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 STAT3P40763 770 aa13.91□□□□□ -0.18
USP3-220ENST00000561381 TDO2P48775 406 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms