RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 TRPA1O75762 1119 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 DNAJC8O75937 253 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 FKBP9O95302 570 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 LTFP02788 710 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 NR3C2P08235 984 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 FGFR1P11362 822 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 VDRP11473 427 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 PTPRAP18433 802 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 NFKB1P19838 968 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 MSX1P28360 303 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 SOX18P35713 384 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ARL4DP49703 201 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 RENBPP51606 427 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 KPNA1P52294 538 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 TERF1P54274 439 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 PTPN5P54829 565 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 NAP1L1P55209 391 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 WDR4P57081 412 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 GJA9P57773 515 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ETF1P62495 437 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 NUCB1Q02818 461 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 RASSF7Q02833 373 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 MLLT1Q03111 559 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 TBC1D8BQ0IIM8 1120 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 POU4F2Q12837 409 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 GRM1Q13255 1194 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 GBX1Q14549 363 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 GRM3Q14832 879 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 TAF12Q16514 161 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 PCSK7Q16549 785 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 PRR16Q569H4 304 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 FAM133BQ5BKY9 247 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 WIPI1Q5MNZ9 446 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 FOXB2Q5VYV0 432 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CEP135Q66GS9 1140 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 FAAH2Q6GMR7 532 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 FIGNL1Q6PIW4 674 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 THSD4Q6ZMP0 1018 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 RINLQ6ZS11 566 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 TTLL7Q6ZT98 887 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CCDC149Q6ZUS6 474 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 TOGARAM2Q6ZUX3 1019 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 LHFPL2Q6ZUX7 228 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 FKBP9P1Q75LS8 142 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 PRICKLE2Q7Z3G6 844 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 MTDHQ86UE4 582 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 CREBRFQ8IUR6 639 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CCDC144CPQ8IYA2 1237 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CACTIN-AS1Q8N1I8 211 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CLASRPQ8N2M8 674 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 MIER2Q8N344 545 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CPA6Q8N4T0 437 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CAMKK1Q8N5S9 505 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 TMEM102Q8N9M5 508 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 ANKLE1Q8NAG6 615 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 SNRNP27Q8WVK2 155 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 POF1BQ8WVV4 589 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 KCTD13Q8WZ19 329 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 BSNDQ8WZ55 320 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 SMARCC1Q92922 1105 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 PTPRN2Q92932 1015 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 KISS1RQ969F8 398 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 KCTD12Q96CX2 325 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 ATG4CQ96DT6 458 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CCDC138Q96M89 665 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 CORO1BQ9BR76 489 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 GRIP2Q9C0E4 1043 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 BHLHE41Q9C0J9 482 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 RNF38Q9H0F5 515 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 EFCC1Q9HA90 598 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ARHGEF4Q9NR80 690 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 KLHL11Q9NVR0 708 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 TLR7Q9NYK1 1049 aaKnown RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 REV1Q9UBZ9 1251 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 POLG2Q9UHN1 485 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 KLF15Q9UIH9 416 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ASAP1Q9ULH1 1129 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ZBTB21Q9ULJ3 1066 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 POLR3KQ9Y2Y1 108 aaPredicted RBP2.45□□□□□ -2.02
RTF1-207ENST00000561076 SNCAIPQ9Y6H5 919 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 DGKBQ9Y6T7 804 aa2.45□□□□□ -2.02
RTF1-207ENST00000561076 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP2.44□□□□□ -2.02
RTF1-207ENST00000561076 FAM170AA1A519 330 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 PRAMEF27A3QJZ7 478 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 KLHL33A6NCF5 533 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 UPK3BL1B0FP48 263 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 UPK3BL2E5RIL1 263 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 AP1G1O43747 822 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 MGEA5O60502 916 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 HIP1RO75146 1068 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 CLEC3AO75596 197 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 PRKD3O94806 890 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 PGRP06401 933 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 SLC5A1P13866 664 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 ZKSCAN1P17029 563 aaPredicted RBP2.44□□□□□ -2.02
RTF1-207ENST00000561076 EIF2AK2P19525 551 aaKnown RBP2.44□□□□□ -2.02
RTF1-207ENST00000561076 POU3F2P20265 443 aaPredicted RBP2.44□□□□□ -2.02
RTF1-207ENST00000561076 BMP6P22004 513 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 KRT9P35527 623 aa2.44□□□□□ -2.02
RTF1-207ENST00000561076 IARSP41252 1262 aaKnown RBP2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms