RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 SLFNL1Q499Z3 407 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 DPP9Q86TI2 863 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 GPATCH3Q96I76 525 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 PAG1Q9NWQ8 432 aa16.74■□□□□ 0.27
LDLR-213ENST00000560502 TTC41PQ6P2S7 1318 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 SMIM22K7EJ46 135 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 DLL1O00548 723 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 SMARCA5O60264 1052 aaPredicted RBP16.73■□□□□ 0.27
LDLR-213ENST00000560502 MBD4O95243 580 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 ICA1Q05084 483 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 ABRAQ8N0Z2 381 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 ATG4CQ96DT6 458 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 MROH8Q9H579 483 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 VCPKMTQ9H867 229 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 ARHGEF10LQ9HCE6 1279 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 ATP8A2Q9NTI2 1148 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 SMCHD1A6NHR9 2005 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 DNAH12Q6ZR08 3092 aa16.73■□□□□ 0.27
LDLR-213ENST00000560502 WDR46O15213 610 aaKnown RBP16.72■□□□□ 0.27
LDLR-213ENST00000560502 SEPT4O43236 478 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 FLOT1O75955 427 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 ATP5JP18859 108 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 ATN1P54259 1190 aaPredicted RBP16.72■□□□□ 0.27
LDLR-213ENST00000560502 RTP1P59025 263 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 SNX17Q15036 470 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 C12orf60Q5U649 245 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 CCDC17Q96LX7 622 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 SH2D4AQ9H788 454 aa16.72■□□□□ 0.27
LDLR-213ENST00000560502 UPF2Q9HAU5 1272 aaKnown RBP16.72■□□□□ 0.27
LDLR-213ENST00000560502 CYP2D7A0A087X1C5 515 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 CHGBP05060 677 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 GJC2Q5T442 439 aaPredicted RBP16.71■□□□□ 0.27
LDLR-213ENST00000560502 C16orf86Q6ZW13 317 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 SPICE1Q8N0Z3 855 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 ARRDC4Q8NCT1 418 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 HAUS7Q99871 368 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 BOLA2Q9H3K6 86 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 ADAMTS5Q9UNA0 930 aa16.71■□□□□ 0.27
LDLR-213ENST00000560502 ROBO3Q96MS0 1386 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 POTEB2H3BUK9 544 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 ERC2O15083 957 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 CDC45O75419 566 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 CDK8P49336 464 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 TMEM132BQ14DG7 1078 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 UBE3CQ15386 1083 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 FAM109BQ6ICB4 259 aaPredicted RBP16.7■□□□□ 0.26
LDLR-213ENST00000560502 CASC1Q6TDU7 716 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 NCAPG2Q86XI2 1143 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 MAML3Q96JK9 1138 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 LBHD1Q9BQE6 289 aaPredicted RBP16.7■□□□□ 0.26
LDLR-213ENST00000560502 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.7■□□□□ 0.262e-14■■■□□ 14.7
LDLR-213ENST00000560502 SLC5A4Q9NY91 659 aa16.7■□□□□ 0.26
LDLR-213ENST00000560502 USP17L12C9JPN9 530 aa16.69■□□□□ 0.26
LDLR-213ENST00000560502 USP17L21D6R901 530 aa16.69■□□□□ 0.26
LDLR-213ENST00000560502 GSPT1P15170 499 aaKnown RBP16.69■□□□□ 0.26
LDLR-213ENST00000560502 PLS1Q14651 629 aa16.69■□□□□ 0.26
LDLR-213ENST00000560502 ANO1Q5XXA6 986 aa16.69■□□□□ 0.26
LDLR-213ENST00000560502 SLC39A5Q6ZMH5 540 aa16.69■□□□□ 0.26
LDLR-213ENST00000560502 KBTBD13C9JR72 458 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 SLC25A27O95847 323 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 FCER1AP12319 257 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 EEF2P13639 858 aaKnown RBP16.68■□□□□ 0.26
LDLR-213ENST00000560502 FAM47AQ5JRC9 791 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 PRAMEF19Q5SWL8 479 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 C1orf53Q5VUE5 145 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 OTUD7AQ8TE49 926 aaPredicted RBP16.68■□□□□ 0.26
LDLR-213ENST00000560502 FBXO28Q9NVF7 368 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 NRBP1Q9UHY1 535 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 ATP11BQ9Y2G3 1177 aa16.68■□□□□ 0.26
LDLR-213ENST00000560502 ANP32AP39687 249 aaKnown RBP16.67■□□□□ 0.26
LDLR-213ENST00000560502 LRRC41Q15345 812 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 TRIM60Q495X7 471 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 CTR9Q6PD62 1173 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 RIOX2Q8IUF8 465 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 AMOTL1Q8IY63 956 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 REPS2Q8NFH8 660 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 GUCD1Q96NT3 240 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.67■□□□□ 0.26
LDLR-213ENST00000560502 KANSL2Q9H9L4 492 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 ECHDC1Q9NTX5 307 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 PRKAG2Q9UGJ0 569 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 ZNF214Q9UL59 606 aaPredicted RBP16.67■□□□□ 0.26
LDLR-213ENST00000560502 A0A0C4DFX4 3053 aa16.67■□□□□ 0.26
LDLR-213ENST00000560502 MYH4Q9Y623 1939 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 PUS7LQ9H0K6 701 aaKnown RBP16.66■□□□□ 0.26
LDLR-213ENST00000560502 BCL11AQ9H165 835 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 PDLIM7Q9NR12 457 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 PPP1R9AQ9ULJ8 1098 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 PHF24Q9UPV7 400 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 DIS3Q9Y2L1 958 aaKnown RBP16.66■□□□□ 0.26
LDLR-213ENST00000560502 SLC4A4Q9Y6R1 1079 aa16.66■□□□□ 0.26
LDLR-213ENST00000560502 VWA5AO00534 786 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 SDSP20132 328 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 ADCYAP1R1P41586 468 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 ZNF792Q3KQV3 632 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 DDRGK1Q96HY6 314 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 MMP19Q99542 508 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 GOPCQ9HD26 462 aa16.65■□□□□ 0.26
LDLR-213ENST00000560502 ARPP21Q9UBL0 812 aaPredicted RBP16.65■□□□□ 0.26
LDLR-213ENST00000560502 PGK2P07205 417 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms