RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CFHR5Q9BXR6 569 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 BACH2Q9BYV9 841 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 ZSWIM6Q9HCJ5 1215 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 RNF186Q9NXI6 227 aa11.79□□□□□ -0.52
USP3-216ENST00000559873 TRPA1O75762 1119 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 CALM1P0DP23 149 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 CALM2P0DP24 149 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 CALM3P0DP25 149 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 RBM25P49756 843 aaKnown RBP11.78□□□□□ -0.52
USP3-216ENST00000559873 STAT2P52630 851 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 ASPRV1Q53RT3 343 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 FAM83BQ5T0W9 1011 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 CATSPERGQ6ZRH7 1159 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 FAM160B2Q86V87 743 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 IL17RAQ96F46 866 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 SLF1Q9BQI6 1058 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 ASCC2Q9H1I8 757 aaPredicted RBP11.78□□□□□ -0.52
USP3-216ENST00000559873 LY9Q9HBG7 655 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 WBP1LQ9NX94 342 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 HOXC10Q9NYD6 342 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 FEM1BQ9UK73 627 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 MTMR7Q9Y216 660 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 CTDP1Q9Y5B0 961 aaPredicted RBP11.78□□□□□ -0.52
USP3-216ENST00000559873 SLC12A7Q9Y666 1083 aa11.78□□□□□ -0.52
USP3-216ENST00000559873 PARP1P09874 1014 aaKnown RBP11.77□□□□□ -0.53
USP3-216ENST00000559873 FDX1P10109 184 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 CYP2C8P10632 490 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 PDHBP11177 359 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 KIF5BP33176 963 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 EXOSC10Q01780 885 aaKnown RBP11.77□□□□□ -0.53
USP3-216ENST00000559873 CRHR2Q13324 411 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 COG2Q14746 738 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 ANKRD1Q15327 319 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 SGMS1Q86VZ5 419 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 ZNF654Q8IZM8 581 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 MB21D1Q8N884 522 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 CTCFLQ8NI51 663 aaPredicted RBP11.77□□□□□ -0.53
USP3-216ENST00000559873 NKX2-3Q8TAU0 364 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 IGDCC4Q8TDY8 1250 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 CHURC1Q8WUH1 139 aa11.77□□□□□ -0.53
USP3-216ENST00000559873 TMEM232C9JQI7 657 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 TLR2O60603 784 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 PLA2G6O60733 806 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 SNHG28P0DPA3 235 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 RCAN1P53805 252 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 HERVK_113P62684 666 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 NOM1Q5C9Z4 860 aaKnown RBP11.76□□□□□ -0.53
USP3-216ENST00000559873 LBX2Q6XYB7 198 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 Q6ZUG5 572 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 FBXL16Q8N461 479 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 PRPF38AQ8NAV1 312 aaKnown RBP11.76□□□□□ -0.53
USP3-216ENST00000559873 TCEANC2Q96MN5 208 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 MAP3K14Q99558 947 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 NUP88Q99567 741 aaPredicted RBP11.76□□□□□ -0.53
USP3-216ENST00000559873 LRRC2Q9BYS8 371 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 UPF3BQ9BZI7 483 aaKnown RBP11.76□□□□□ -0.53
USP3-216ENST00000559873 PDRG1Q9NUG6 133 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 PPP1R9AQ9ULJ8 1098 aa11.76□□□□□ -0.53
USP3-216ENST00000559873 CEP350Q5VT06 3117 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 SPDYE16A6NNV3 312 aaPredicted RBP11.75□□□□□ -0.53
USP3-216ENST00000559873 DHX16O60231 1041 aaKnown RBP11.75□□□□□ -0.53
USP3-216ENST00000559873 HSPA1AP0DMV8 641 aaKnown RBP11.75□□□□□ -0.53
USP3-216ENST00000559873 HSPA1BP0DMV9 641 aaKnown RBP11.75□□□□□ -0.53
USP3-216ENST00000559873 DSG3P32926 999 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 GNAQP50148 359 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 CCNA1P78396 465 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 ZNF543Q08ER8 600 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 GRM4Q14833 912 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 RABEP1Q15276 862 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 FAM110CQ1W6H9 321 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 KIAA1755Q5JYT7 1200 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 KCTD1Q719H9 257 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 MICU3Q86XE3 530 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 NUP133Q8WUM0 1156 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 BRF1Q92994 677 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 KIFC2Q96AC6 838 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 PNMA2Q9UL42 364 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 NAP1L2Q9ULW6 460 aaPredicted RBP11.75□□□□□ -0.53
USP3-216ENST00000559873 RABGAP1Q9Y3P9 1069 aa11.75□□□□□ -0.53
USP3-216ENST00000559873 KLF18A0A0U1RQI7 1052 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 CCDC196A0A1B0GTZ2 297 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 GOLGA8BA8MQT2 603 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 ZBTB43O43298 467 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 ZBED4O75132 1171 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 TBC1D8O95759 1140 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 CPA1P15085 419 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 COPB2P35606 906 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 CTCFP49711 727 aaPredicted RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 TROAPQ12815 778 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 KIF22Q14807 665 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 ARHGEF6Q15052 776 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 PPP2R5BQ15173 497 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 APOA5Q6Q788 366 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 SAMD1Q6SPF0 538 aaPredicted RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 CCAR1Q8IX12 1150 aaKnown RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 TBC1D32Q96NH3 1257 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 P2RX7Q99572 595 aaKnown RBP11.74□□□□□ -0.53
USP3-216ENST00000559873 LZTS2Q9BRK4 669 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 PAGR1Q9BTK6 254 aa11.74□□□□□ -0.53
USP3-216ENST00000559873 AGXT2Q9BYV1 514 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms