RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 MIGA2Q7L4E1 593 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 TRIM34Q9BYJ4 488 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 EHD4Q9H223 541 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 SSC5DA1L4H1 1573 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 TRPM7Q96QT4 1865 aa20.5■□□□□ 0.87
SNX1-208ENST00000559844 TSPY2A6NKD2 308 aa20.49■□□□□ 0.87
SNX1-208ENST00000559844 TOMM70O94826 608 aa20.49■□□□□ 0.87
SNX1-208ENST00000559844 MMP1P03956 469 aa20.49■□□□□ 0.87
SNX1-208ENST00000559844 TYRO3Q06418 890 aa20.49■□□□□ 0.87
SNX1-208ENST00000559844 FMR1Q06787 632 aaKnown RBP eCLIP20.49■□□□□ 0.87
SNX1-208ENST00000559844 FSIP1Q8NA03 581 aa20.49■□□□□ 0.87
SNX1-208ENST00000559844 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.49■□□□□ 0.87
SNX1-208ENST00000559844 XBP1P17861 261 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 SASS6Q6UVJ0 657 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 FOXP4Q8IVH2 680 aaPredicted RBP20.48■□□□□ 0.87
SNX1-208ENST00000559844 JMYQ8N9B5 988 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 SLC44A5Q8NCS7 719 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 SMC1BQ8NDV3 1235 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 HOOK2Q96ED9 719 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 KINO60870 393 aaKnown RBP20.48■□□□□ 0.87
SNX1-208ENST00000559844 NF2P35240 595 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 SLC39A14Q15043 492 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 ENGASEQ8NFI3 743 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 FOXP1Q9H334 677 aaPredicted RBP20.48■□□□□ 0.87
SNX1-208ENST00000559844 GOLPH3LQ9H4A5 285 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 DNAJC18Q9H819 358 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 ZNF408Q9H9D4 720 aa20.48■□□□□ 0.87
SNX1-208ENST00000559844 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.48■□□□□ 0.874e-8■■■■■ 48
SNX1-208ENST00000559844 HERC5Q9UII4 1024 aaKnown RBP20.48■□□□□ 0.87
SNX1-208ENST00000559844 PRPF3O43395 683 aaKnown RBP20.47■□□□□ 0.87
SNX1-208ENST00000559844 ITGBL1O95965 494 aaPredicted RBP20.47■□□□□ 0.87
SNX1-208ENST00000559844 GABPAQ06546 454 aa20.47■□□□□ 0.87
SNX1-208ENST00000559844 TROAPQ12815 778 aa20.47■□□□□ 0.87
SNX1-208ENST00000559844 C16orf86Q6ZW13 317 aa20.47■□□□□ 0.87
SNX1-208ENST00000559844 CKAP2LQ8IYA6 745 aa20.47■□□□□ 0.87
SNX1-208ENST00000559844 ZNF287Q9HBT7 754 aa20.47■□□□□ 0.87
SNX1-208ENST00000559844 PPP6R2O75170 966 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 CAVIN2O95810 425 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 GUCY1A2P33402 732 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 SNW1Q13573 536 aaKnown RBP20.46■□□□□ 0.87
SNX1-208ENST00000559844 FAM47AQ5JRC9 791 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 DCAF15Q66K64 600 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 CTCFLQ8NI51 663 aaPredicted RBP20.46■□□□□ 0.87
SNX1-208ENST00000559844 RBM46Q8TBY0 533 aaKnown RBP20.46■□□□□ 0.87
SNX1-208ENST00000559844 FAM200AQ8TCP9 573 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 FZD1Q9UP38 647 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 MRVI1Q9Y6F6 885 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 PRKG1Q13976 671 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 METTL16Q86W50 562 aaKnown RBP20.46■□□□□ 0.87
SNX1-208ENST00000559844 NOSTRINQ8IVI9 506 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 SWAP70Q9UH65 585 aa20.46■□□□□ 0.87
SNX1-208ENST00000559844 ATAD5Q96QE3 1844 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 TBC1D12O60347 775 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 CDK8P49336 464 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 DGKHQ86XP1 1220 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 DIS3L2Q8IYB7 885 aaKnown RBP20.45■□□□□ 0.86
SNX1-208ENST00000559844 CCDC82Q8N4S0 544 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 MKNK2Q9HBH9 465 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 ESPNB1AK53 854 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 TMTC3Q6ZXV5 915 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 FMR1NBQ8N0W7 255 aaPredicted RBP20.45■□□□□ 0.86
SNX1-208ENST00000559844 ANKS1AQ92625 1134 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 TCP11L1Q9NUJ3 509 aa20.45■□□□□ 0.86
SNX1-208ENST00000559844 OTOFQ9HC10 1997 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 UBE2Q2LH0YL09 131 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 SHMT1P34896 483 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 TFAP4Q01664 338 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 MAP3K10Q02779 954 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 FUT2Q10981 343 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 CMTR1Q8N1G2 835 aaKnown RBP20.44■□□□□ 0.86
SNX1-208ENST00000559844 ZNF341Q9BYN7 854 aa20.44■□□□□ 0.86
SNX1-208ENST00000559844 RTN4Q9NQC3 1192 aaKnown RBP20.44■□□□□ 0.86
SNX1-208ENST00000559844 PPP1R12BO60237 982 aaPredicted RBP20.43■□□□□ 0.86
SNX1-208ENST00000559844 CMA1P23946 247 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 KIF5BP33176 963 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 TTLL12Q14166 644 aaPredicted RBP20.43■□□□□ 0.86
SNX1-208ENST00000559844 ZNF444Q8N0Y2 327 aaPredicted RBP20.43■□□□□ 0.86
SNX1-208ENST00000559844 MAP3K14Q99558 947 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 KAT14Q9H8E8 782 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 CCDC39Q9UFE4 941 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 TAOK2Q9UL54 1235 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 BTBD18B2RXH4 712 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 CELF2O95319 508 aaKnown RBP20.43■□□□□ 0.86
SNX1-208ENST00000559844 PTPAQ15257 358 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 RILPL1Q5EBL4 403 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 TATDN1Q6P1N9 297 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.43■□□□□ 0.86
SNX1-208ENST00000559844 KCNJ14Q9UNX9 436 aa20.43■□□□□ 0.86
SNX1-208ENST00000559844 NMT2O60551 498 aa20.42■□□□□ 0.86
SNX1-208ENST00000559844 AXDND1Q5T1B0 1012 aaPredicted RBP20.42■□□□□ 0.86
SNX1-208ENST00000559844 RRAGDQ9NQL2 400 aaPredicted RBP20.42■□□□□ 0.86
SNX1-208ENST00000559844 PASKQ96RG2 1323 aa20.42■□□□□ 0.86
SNX1-208ENST00000559844 PAPPA2Q9BXP8 1791 aa20.42■□□□□ 0.86
SNX1-208ENST00000559844 DOCK1Q14185 1865 aa20.42■□□□□ 0.86
SNX1-208ENST00000559844 USP2O75604 605 aaPredicted RBP20.41■□□□□ 0.86
SNX1-208ENST00000559844 PLEKHA8P1O95397 391 aa20.41■□□□□ 0.86
SNX1-208ENST00000559844 TSPY3P0CV98 308 aa20.41■□□□□ 0.86
SNX1-208ENST00000559844 TSPY8P0CW00 308 aa20.41■□□□□ 0.86
SNX1-208ENST00000559844 PKN1Q16512 942 aa20.41■□□□□ 0.86
SNX1-208ENST00000559844 ANO6Q4KMQ2 910 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms