RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 ENOX1Q8TC92 643 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ZNF384Q8TF68 577 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 C8orf37Q96NL8 207 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 CSRNP2Q9H175 543 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SERTAD1Q9UHV2 236 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 XDHP47989 1333 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SPATA31A6Q5VVP1 1343 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 IRS2Q9Y4H2 1338 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 GOLGA6L9A6NEM1 432 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 UNCXA6NJT0 531 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 LDHBP07195 334 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 HMGB2P26583 209 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 USP5P45974 858 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 PLCD1P51178 756 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 PIP4K2BP78356 416 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ATP2C1P98194 919 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ARID5BQ14865 1188 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 PFKFB3Q16875 520 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 TTC38Q5R3I4 469 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 GALNT17Q6IS24 598 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 DGKHQ86XP1 1220 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 CMTR1Q8N1G2 835 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 CCDC148Q8NFR7 591 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SPATA20Q8TB22 786 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 OXER1Q8TDS5 423 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 ANKS1AQ92625 1134 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 KAT14Q9H8E8 782 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 TFCP2L1Q9NZI6 479 aa8.28□□□□□ -1.08
VPS13C-206ENST00000558338 SRP68Q9UHB9 627 aaKnown RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 V9GY48 417 aaPredicted RBP8.28□□□□□ -1.08
VPS13C-206ENST00000558338 CYP2D7A0A087X1C5 515 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 SLFN14P0C7P3 912 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 PRDX5P30044 214 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 RFC4P35249 363 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 TXLNAP40222 546 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 NLRP5P59047 1200 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 RBM26Q5T8P6 1007 aaKnown RBP8.27□□□□□ -1.09
VPS13C-206ENST00000558338 ARMCX5Q6P1M9 558 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 ANKRD7Q92527 254 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 TNFRSF25Q93038 417 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 POM121Q96HA1 1249 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 LZTS2Q9BRK4 669 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 CCDC94Q9BW85 323 aaPredicted RBP8.27□□□□□ -1.09
VPS13C-206ENST00000558338 HSD3B7Q9H2F3 369 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 TCP11L1Q9NUJ3 509 aa8.27□□□□□ -1.09
VPS13C-206ENST00000558338 ZSCAN12O43309 604 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 PRDM1O75626 825 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 KLRK1P26718 216 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 TM4SF1P30408 202 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 PPP4CP60510 307 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SPECC1Q5M775 1068 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 TRAPPC3LQ5T215 181 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 C12orf60Q5U649 245 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ARL6IP4Q66PJ3 421 aaKnown RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ISM2Q6H9L7 571 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SLF2Q8IX21 1173 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 PDCL2Q8N4E4 241 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 CNBD1Q8NA66 436 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 L3MBTL3Q96JM7 780 aaPredicted RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 GSDMAQ96QA5 445 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 CTAGE1Q96RT6 745 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 MCM9Q9NXL9 1143 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ANKIB1Q9P2G1 1089 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ARHGAP6O43182 974 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ATP1A3P13637 1013 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF18P17022 549 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ATP2B1P20020 1258 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 GRIN1Q05586 938 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SEMA3FQ13275 785 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 GRM4Q14833 912 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SH3RF1Q7Z6J0 888 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 FOXP4Q8IVH2 680 aaPredicted RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF710Q8N1W2 664 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SRBD1Q8N5C6 995 aaKnown RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 IQUBQ8NA54 791 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 DAGLBQ8NCG7 672 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF592Q92610 1267 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 SYMPKQ92797 1274 aaKnown RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 RNF166Q96A37 237 aaPredicted RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 DHX58Q96C10 678 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 ERO1AQ96HE7 468 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 PPP1R13BQ96KQ4 1090 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 FANCLQ9NW38 375 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 RMND1Q9NWS8 449 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 CGNQ9P2M7 1197 aaKnown RBP8.26□□□□□ -1.09
VPS13C-206ENST00000558338 USP21Q9UK80 565 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 NFE2L3Q9Y4A8 694 aa8.26□□□□□ -1.09
VPS13C-206ENST00000558338 DDX60LQ5H9U9 1706 aaKnown RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 PHLPP2Q6ZVD8 1323 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 SYNRGQ9UMZ2 1314 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 USP27XA6NNY8 438 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 BMP6P22004 513 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 ATP2B4P23634 1241 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 LONP1P36776 959 aaKnown RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 ST5P78524 1137 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 FAM47AQ5JRC9 791 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 E4F1Q66K89 784 aaPredicted RBP8.25□□□□□ -1.09
VPS13C-206ENST00000558338 SPECC1LQ69YQ0 1117 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 BLIDQ8IZY5 108 aa8.25□□□□□ -1.09
VPS13C-206ENST00000558338 ZNF444Q8N0Y2 327 aaPredicted RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms