RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 RAG1P15918 1043 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 SRSF3P84103 164 aaKnown RBP5.05□□□□□ -1.6
VPS13C-205ENST00000558088 MPP2Q14168 576 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 CWF19L2Q2TBE0 894 aaKnown RBP5.05□□□□□ -1.6
VPS13C-205ENST00000558088 ERICH6BQ5W0A0 696 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 CEP128Q6ZU80 1094 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 SND1Q7KZF4 910 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS13C-205ENST00000558088 TMC4Q7Z404 712 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 SIRT2Q8IXJ6 389 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 DAGLBQ8NCG7 672 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 LINC01599Q8WXQ3 324 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 SIGLEC10Q96LC7 697 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 TRAIPQ9BWF2 469 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 SGPP1Q9BX95 441 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 CRTAC1Q9NQ79 661 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 VTI1BQ9UEU0 232 aa5.05□□□□□ -1.6
VPS13C-205ENST00000558088 ABLIM1O14639 778 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 USP2O75604 605 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-205ENST00000558088 SASH1O94885 1247 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 KIR2DL1P43626 348 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-205ENST00000558088 KIR2DL2P43627 348 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-205ENST00000558088 FAM160A1Q05DH4 1040 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 RAD51AP2Q09MP3 1159 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 REC114Q7Z4M0 266 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 NLRX1Q86UT6 975 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 ZNF655Q8N720 491 aaPredicted RBP5.04□□□□□ -1.6
VPS13C-205ENST00000558088 GOLM1Q8NBJ4 401 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 MAP6Q96JE9 813 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 RHOVQ96L33 236 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 RSRP1Q9BUV0 290 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS13C-205ENST00000558088 TCFL5Q9UL49 500 aa5.04□□□□□ -1.6
VPS13C-205ENST00000558088 RGS13O14921 159 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 NRDCO43847 1150 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 ENDOUP21128 410 aaKnown RBP5.03□□□□□ -1.6
VPS13C-205ENST00000558088 ARL4AP40617 200 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 GALK1P51570 392 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 TMEM62Q0P6H9 643 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 SHISA4Q96DD7 197 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 FAM161BQ96MY7 647 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 G6PC3Q9BUM1 346 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 HDAC8Q9BY41 377 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 FOXP3Q9BZS1 431 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 GCM1Q9NP62 436 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 EBF1Q9UH73 591 aa5.03□□□□□ -1.6
VPS13C-205ENST00000558088 POLR3KQ9Y2Y1 108 aaPredicted RBP5.03□□□□□ -1.6
VPS13C-205ENST00000558088 MINDY4BA8MYZ0 360 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 FKTNO75072 461 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 SYPP08247 313 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 CTSHP09668 335 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 SYN1P17600 705 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 PI3P19957 117 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 SSPNQ14714 243 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 NFIXQ14938 502 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 ARSHQ5FYA8 562 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 LCE5AQ5TCM9 118 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 FAM196AQ6ZSG2 479 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 TCTN2Q96GX1 697 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 GMIPQ9P107 970 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 TAF6LQ9Y6J9 622 aa5.02□□□□□ -1.61
VPS13C-205ENST00000558088 FOXD2O60548 495 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-205ENST00000558088 MPOP05164 745 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 PNLIPP16233 465 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 AFF3P51826 1226 aaKnown RBP5.01□□□□□ -1.61
VPS13C-205ENST00000558088 RTP1P59025 263 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 GALNT18Q6P9A2 607 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 USHBP1Q8N6Y0 703 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 MARCH10Q8NA82 808 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-205ENST00000558088 LINC00116Q8NCU8 138 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 C20orf173Q96LM9 149 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 KCNC2Q96PR1 638 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 BCL11AQ9H165 835 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 MBD1Q9UIS9 605 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-205ENST00000558088 ZNF281Q9Y2X9 895 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 ROBO2Q9HCK4 1378 aa5.01□□□□□ -1.61
VPS13C-205ENST00000558088 N4BP3O15049 544 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 TLR3O15455 904 aaKnown RBP5□□□□□ -1.61
VPS13C-205ENST00000558088 TRIM13O60858 407 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 DNAJA2O60884 412 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 CLEC3AO75596 197 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 VIPR1P32241 457 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 NBPF9Q3BBW0 867 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 NBPF12Q5TAG4 269 aaPredicted RBP5□□□□□ -1.61
VPS13C-205ENST00000558088 TMC3Q7Z5M5 1100 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 SP8Q8IXZ3 490 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 HHIPL1Q96JK4 782 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 FCRL2Q96LA5 508 aaPredicted RBP5□□□□□ -1.61
VPS13C-205ENST00000558088 TNFRSF10DQ9UBN6 386 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 SUPT16HQ9Y5B9 1047 aaKnown RBP5□□□□□ -1.61
VPS13C-205ENST00000558088 PCDHB14Q9Y5E9 798 aa5□□□□□ -1.61
VPS13C-205ENST00000558088 A0A0G2JLL6 359 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-205ENST00000558088 WTIPA6NIX2 430 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-205ENST00000558088 SLC22A31A6NKX4 558 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 NOTOA8MTQ0 251 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 UBOX5O94941 541 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 PRAMEF1O95521 474 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 CCNFP41002 786 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 LAPTM5Q13571 262 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 AEBP1Q8IUX7 1158 aa4.99□□□□□ -1.61
VPS13C-205ENST00000558088 FBXO27Q8NI29 283 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms