RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 REPS2Q8NFH8 660 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 GPATCH3Q96I76 525 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 CCDC17Q96LX7 622 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 FSD1Q9BTV5 496 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 C11orf49Q9H6J7 331 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 INCENPQ9NQS7 918 aa13.08□□□□□ -0.32
SYNE2-227ENST00000557307 SOX1O00570 391 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-227ENST00000557307 RAD21O60216 631 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 CYBAP13498 195 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 TDO2P48775 406 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 ZMYM1Q5SVZ6 1142 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 PRAMEF19Q5SWL8 479 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 VPS53Q5VIR6 699 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 NCAPG2Q86XI2 1143 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 AMOTL1Q8IY63 956 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 IFNL3Q8IZI9 196 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 LPAR1Q92633 364 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 STAP2Q9UGK3 403 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 ADAMTS5Q9UNA0 930 aa13.07□□□□□ -0.32
SYNE2-227ENST00000557307 LAMA2P24043 3122 aaKnown RBP13.06□□□□□ -0.32
SYNE2-227ENST00000557307 NDUFB10O96000 172 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 LRRC26Q2I0M4 334 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 FAM47AQ5JRC9 791 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 ANKRD45Q5TZF3 282 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 TRMT44Q8IYL2 757 aaKnown RBP13.06□□□□□ -0.32
SYNE2-227ENST00000557307 SHCBP1Q8NEM2 672 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 CHMP4CQ96CF2 233 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 DDRGK1Q96HY6 314 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 NBPF3Q9H094 633 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 KANSL2Q9H9L4 492 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 HOXC10Q9NYD6 342 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 ZNF214Q9UL59 606 aaPredicted RBP13.06□□□□□ -0.32
SYNE2-227ENST00000557307 IVNS1ABPQ9Y6Y0 642 aa13.06□□□□□ -0.32
SYNE2-227ENST00000557307 GLRX3O76003 335 aaKnown RBP13.05□□□□□ -0.32
SYNE2-227ENST00000557307 PGK2P07205 417 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 ZFYP08048 801 aaPredicted RBP13.05□□□□□ -0.32
SYNE2-227ENST00000557307 CNGA1P29973 690 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 GIMAP6Q6P9H5 292 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 LRRC47Q8N1G4 583 aaKnown RBP13.05□□□□□ -0.32
SYNE2-227ENST00000557307 CEP95Q96GE4 821 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 SH2D4AQ9H788 454 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 PPP1R9AQ9ULJ8 1098 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 RIPK3Q9Y572 518 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 PLIN4Q96Q06 1357 aa13.05□□□□□ -0.32
SYNE2-227ENST00000557307 PATL2C9JE40 543 aaKnown RBP13.04□□□□□ -0.32
SYNE2-227ENST00000557307 F5H6K3 240 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 VWA5AO00534 786 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 APPP05067 770 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 TAL1P17542 331 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-227ENST00000557307 CTDSPL2Q05D32 466 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 KLRC3Q07444 240 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 MFSD14CQ5VZR4 134 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 DPP9Q86TI2 863 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 LENG1Q96BZ8 264 aaPredicted RBP13.04□□□□□ -0.32
SYNE2-227ENST00000557307 MAML3Q96JK9 1138 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 MKNK2Q9HBH9 465 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 NYAP2Q9P242 653 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 CLIP2Q9UDT6 1046 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 DDX20Q9UHI6 824 aaKnown RBP13.04□□□□□ -0.32
SYNE2-227ENST00000557307 NR2E3Q9Y5X4 410 aa13.04□□□□□ -0.32
SYNE2-227ENST00000557307 A0A0D9SFI3 127 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 ERC2O15083 957 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 PDE1AP54750 535 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 PPARAQ07869 468 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 GJC2Q5T442 439 aaPredicted RBP13.03□□□□□ -0.32
SYNE2-227ENST00000557307 OLFML2BQ68BL8 750 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 RIOX2Q8IUF8 465 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 MB21D1Q8N884 522 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 LRCH3Q96II8 777 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 FAM227BQ96M60 508 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 GDF15Q99988 308 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 GOPCQ9HD26 462 aa13.03□□□□□ -0.32
SYNE2-227ENST00000557307 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.03□□□□□ -0.32
SYNE2-227ENST00000557307 NMT2O60551 498 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 IGHDP01880 384 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 GNAT2P19087 354 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 MAGEA10P43363 369 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-227ENST00000557307 HDAC1Q13547 482 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-227ENST00000557307 ZNF589Q86UQ0 364 aaPredicted RBP13.02□□□□□ -0.33
SYNE2-227ENST00000557307 EXOC6Q8TAG9 804 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 MMP19Q99542 508 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 SLF1Q9BQI6 1058 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 LNPKQ9C0E8 428 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 MROH8Q9H579 483 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 MTMR4Q9NYA4 1195 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 COL6A3P12111 3177 aa13.02□□□□□ -0.33
SYNE2-227ENST00000557307 STRNO43815 780 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 STAT3P40763 770 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 ATN1P54259 1190 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-227ENST00000557307 ZNF792Q3KQV3 632 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 SNRNP48Q6IEG0 339 aaKnown RBP13.01□□□□□ -0.33
SYNE2-227ENST00000557307 B4GALNT3Q6L9W6 998 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 FGD4Q96M96 766 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 SENP6Q9GZR1 1112 aaPredicted RBP13.01□□□□□ -0.33
SYNE2-227ENST00000557307 NAPBQ9H115 298 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 IL17RBQ9NRM6 502 aa13.01□□□□□ -0.33
SYNE2-227ENST00000557307 FCER1AP12319 257 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 CAPN2P17655 700 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 SLC4A3P48751 1232 aa13□□□□□ -0.33
SYNE2-227ENST00000557307 SNAP25P60880 206 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms