RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 CYP2B6P20813 491 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 UBXN2AP68543 259 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 MORN1Q5T089 497 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 TBC1D10CQ8IV04 446 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 SOCS4Q8WXH5 440 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 NUDT12Q9BQG2 462 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 MOV10L1Q9BXT6 1211 aaKnown RBP24.32■■□□□ 1.48
VTI1B-205ENST00000555543 UNC93B1Q9H1C4 597 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 IL17RBQ9NRM6 502 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 LAMA4Q16363 1823 aa24.32■■□□□ 1.48
VTI1B-205ENST00000555543 RANBP6O60518 1105 aaKnown RBP24.31■■□□□ 1.48
VTI1B-205ENST00000555543 WDR78Q5VTH9 848 aa24.31■■□□□ 1.48
VTI1B-205ENST00000555543 MB21D1Q8N884 522 aa24.31■■□□□ 1.48
VTI1B-205ENST00000555543 SPATC1LQ9H0A9 340 aa24.31■■□□□ 1.48
VTI1B-205ENST00000555543 PPP1R9AQ9ULJ8 1098 aa24.31■■□□□ 1.48
VTI1B-205ENST00000555543 ADAMTS5Q9UNA0 930 aa24.31■■□□□ 1.48
VTI1B-205ENST00000555543 COL11A1P12107 1806 aaPredicted RBP24.31■■□□□ 1.48
VTI1B-205ENST00000555543 TRIM32Q13049 653 aa24.3■■□□□ 1.48
VTI1B-205ENST00000555543 NKX2-3Q8TAU0 364 aa24.3■■□□□ 1.48
VTI1B-205ENST00000555543 TRIB2Q92519 343 aa24.3■■□□□ 1.48
VTI1B-205ENST00000555543 SHISA4Q96DD7 197 aa24.3■■□□□ 1.48
VTI1B-205ENST00000555543 CWC22Q9HCG8 908 aaKnown RBP24.3■■□□□ 1.48
VTI1B-205ENST00000555543 SYNPO2Q9UMS6 1093 aa24.3■■□□□ 1.48
VTI1B-205ENST00000555543 HMGCRP04035 888 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 TMEM132BQ14DG7 1078 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 RRP12Q5JTH9 1297 aaKnown RBP24.29■■□□□ 1.48
VTI1B-205ENST00000555543 SKAP1Q86WV1 359 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 GMCL1P1Q8NEA9 526 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 RNF208Q9H0X6 261 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 TOMM22Q9NS69 142 aa24.29■■□□□ 1.48
VTI1B-205ENST00000555543 VWA5AO00534 786 aa24.28■■□□□ 1.48
VTI1B-205ENST00000555543 XRCC5P13010 732 aaKnown RBP24.28■■□□□ 1.48
VTI1B-205ENST00000555543 PTPREP23469 700 aa24.28■■□□□ 1.48
VTI1B-205ENST00000555543 PLS1Q14651 629 aa24.28■■□□□ 1.48
VTI1B-205ENST00000555543 STAG1Q8WVM7 1258 aa24.28■■□□□ 1.48
VTI1B-205ENST00000555543 DSCC1Q9BVC3 393 aa24.28■■□□□ 1.48
VTI1B-205ENST00000555543 SLC15A5A6NIM6 579 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 ERCC3P19447 782 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 CHMLP26374 656 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 RGS2P41220 211 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 MAP2K5Q13163 448 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 GRB14Q14449 540 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 CCL14Q16627 93 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 AKNAD1Q5T1N1 836 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 REPS2Q8NFH8 660 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 APBA2Q99767 749 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 SLF1Q9BQI6 1058 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 STX8Q9UNK0 236 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 NEDD4P46934 1319 aa24.27■■□□□ 1.48
VTI1B-205ENST00000555543 ZNF236Q9UL36 1845 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 PDE4DIPQ5VU43 2346 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 GJB1P08034 283 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 NOVP48745 357 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 SLFN13Q68D06 897 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 CENPQQ7L2Z9 268 aaPredicted RBP24.26■■□□□ 1.47
VTI1B-205ENST00000555543 RASGRP2Q7LDG7 609 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 SHCBP1Q8NEM2 672 aa24.26■■□□□ 1.47
VTI1B-205ENST00000555543 MFSD6Q6ZSS7 791 aa24.25■■□□□ 1.47
VTI1B-205ENST00000555543 CHMP4CQ96CF2 233 aa24.25■■□□□ 1.47
VTI1B-205ENST00000555543 PAK6Q9NQU5 681 aaPredicted RBP24.25■■□□□ 1.47
VTI1B-205ENST00000555543 ZNF214Q9UL59 606 aaPredicted RBP24.25■■□□□ 1.47
VTI1B-205ENST00000555543 IVNS1ABPQ9Y6Y0 642 aa24.25■■□□□ 1.47
VTI1B-205ENST00000555543 RAD50Q92878 1312 aa24.25■■□□□ 1.47
VTI1B-205ENST00000555543 ZNF213O14771 459 aa24.24■■□□□ 1.47
VTI1B-205ENST00000555543 ZKSCAN1P17029 563 aaPredicted RBP24.24■■□□□ 1.47
VTI1B-205ENST00000555543 GJA8P48165 433 aa24.24■■□□□ 1.47
VTI1B-205ENST00000555543 NCAPG2Q86XI2 1143 aa24.24■■□□□ 1.47
VTI1B-205ENST00000555543 FLRT1Q9NZU1 646 aa24.24■■□□□ 1.47
VTI1B-205ENST00000555543 PCP11498 1178 aaKnown RBP24.23■■□□□ 1.47
VTI1B-205ENST00000555543 BMP3P12645 472 aa24.23■■□□□ 1.47
VTI1B-205ENST00000555543 PPP4R3BQ5MIZ7 849 aa24.23■■□□□ 1.47
VTI1B-205ENST00000555543 MAP3K21Q5TCX8 1036 aa24.23■■□□□ 1.47
VTI1B-205ENST00000555543 PRPF38AQ8NAV1 312 aaKnown RBP24.23■■□□□ 1.47
VTI1B-205ENST00000555543 NPLOC4Q8TAT6 608 aa24.23■■□□□ 1.47
VTI1B-205ENST00000555543 U2AF1L4Q8WU68 220 aaKnown RBP24.23■■□□□ 1.47
VTI1B-205ENST00000555543 GMCL1Q96IK5 515 aa24.23■■□□□ 1.47
VTI1B-205ENST00000555543 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.23■■□□□ 1.47
VTI1B-205ENST00000555543 HOXC6P09630 235 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 PRKAR2AP13861 404 aaKnown RBP24.22■■□□□ 1.47
VTI1B-205ENST00000555543 MCCP23508 829 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 ADORA2AP29274 412 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 RIOX2Q8IUF8 465 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 KIFC2Q96AC6 838 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 DEFB118Q96PH6 123 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 RNF41Q9H4P4 317 aaPredicted RBP24.22■■□□□ 1.47
VTI1B-205ENST00000555543 MROH8Q9H579 483 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 TCP11L1Q9NUJ3 509 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 FEM1BQ9UK73 627 aa24.22■■□□□ 1.47
VTI1B-205ENST00000555543 TMEM232C9JQI7 657 aa24.21■■□□□ 1.47
VTI1B-205ENST00000555543 STAT3P40763 770 aa24.21■■□□□ 1.47
VTI1B-205ENST00000555543 TRMT44Q8IYL2 757 aaKnown RBP24.21■■□□□ 1.47
VTI1B-205ENST00000555543 RPTORQ8N122 1335 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 STRNO43815 780 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 SGPL1O95470 568 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 SLC25A27O95847 323 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 SLC1A4P43007 532 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 PTH1RQ03431 593 aa24.2■■□□□ 1.46
VTI1B-205ENST00000555543 CACNB2Q08289 660 aaPredicted RBP24.2■■□□□ 1.46
VTI1B-205ENST00000555543 IMMTQ16891 758 aaKnown RBP24.2■■□□□ 1.46
VTI1B-205ENST00000555543 RCSD1Q6JBY9 416 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms