RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 ATP2B2Q01814 1243 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 CUL4AQ13619 759 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 GRB14Q14449 540 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 ZYXQ15942 572 aaKnown RBP13.12□□□□□ -0.31
SHMT2-216ENST00000554975 TNNI3KQ59H18 835 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 TTC39AQ5SRH9 613 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 AACSQ86V21 672 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 RNPC3Q96LT9 517 aaKnown RBP13.12□□□□□ -0.31
SHMT2-216ENST00000554975 PI4KBQ9UBF8 816 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 FPGT-TNNI3KV9GXZ4 949 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 A0A0G2JMZ2 1700 aa13.12□□□□□ -0.31
SHMT2-216ENST00000554975 PARP14Q460N5 1801 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 MYCNP04198 464 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-216ENST00000554975 ADCYAP1R1P41586 468 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 TLE2Q04725 743 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 KLHL40Q2TBA0 621 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 TSHZ3Q63HK5 1081 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 MAPKAPK5Q8IW41 473 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 GTF3C2Q8WUA4 911 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-216ENST00000554975 PPM1EQ8WY54 764 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 FAM122AQ96E09 287 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 CHD7Q9P2D1 2997 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 RABGAP1Q9Y3P9 1069 aa13.11□□□□□ -0.31
SHMT2-216ENST00000554975 COL11A1P12107 1806 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-216ENST00000554975 FSD2A1L4K1 749 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 KBTBD13C9JR72 458 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 BAG4O95429 457 aaKnown RBP13.1□□□□□ -0.31
SHMT2-216ENST00000554975 MAP4K4O95819 1239 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-216ENST00000554975 UQCRFS1P1P0C7P4 283 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 MAP3K12Q12852 859 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 CCDC158Q5M9N0 1113 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 PRAMEF19Q5SWL8 479 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 USP17L2Q6R6M4 530 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 METTL16Q86W50 562 aaKnown RBP13.1□□□□□ -0.31
SHMT2-216ENST00000554975 SPATA5Q8NB90 893 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 ADAMTS19Q8TE59 1207 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 DBNDD2Q9BQY9 259 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 GPR108Q9NPR9 543 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 PALD1Q9ULE6 856 aa13.1□□□□□ -0.31
SHMT2-216ENST00000554975 MBD3O95983 291 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 LDHCP07864 332 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 HOXD11P31277 338 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-216ENST00000554975 LRRC41Q15345 812 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 FAM47AQ5JRC9 791 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 RNF20Q5VTR2 975 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 CATSPERGQ6ZRH7 1159 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 ADGRA1Q86SQ6 560 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 ARRDC4Q8NCT1 418 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 TGFBRAP1Q8WUH2 860 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 TMX3Q96JJ7 454 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 C12orf42Q96LP6 360 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 TM6SF1Q9BZW5 370 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 CCDC8Q9H0W5 538 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-216ENST00000554975 ZNF576Q9H609 170 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 SNRKQ9NRH2 765 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 AATFQ9NY61 560 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-216ENST00000554975 RAI14Q9P0K7 980 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 FLT1P17948 1338 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 XIRP2A4UGR9 3374 aa13.09□□□□□ -0.31
SHMT2-216ENST00000554975 SPDYE16A6NNV3 312 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L15C9J2P7 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L13C9JLJ4 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L11C9JVI0 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L18D6R9N7 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L22D6RA61 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L17D6RBQ6 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L19D6RCP7 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L20D6RJB6 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 GH2P01242 217 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 ARID4AP29374 1257 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-216ENST00000554975 MCAMP43121 646 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 CCNA1P78396 465 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 GSTO1P78417 241 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 USP17L24Q0WX57 530 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 ASB2Q96Q27 587 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 LSG1Q9H089 658 aaKnown RBP13.08□□□□□ -0.32
SHMT2-216ENST00000554975 LRP2BPQ9P2M1 347 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 SAP30BPQ9UHR5 308 aaKnown RBP13.08□□□□□ -0.32
SHMT2-216ENST00000554975 CCDC171Q6TFL3 1326 aa13.08□□□□□ -0.32
SHMT2-216ENST00000554975 MYH7P12883 1935 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 GRXCR1A8MXD5 290 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 SEPT4O43236 478 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 COBLO75128 1261 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 CLTBP09497 229 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 VCAM1P19320 739 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ADORA2AP29274 412 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 PBX2P40425 430 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ADGRE1Q14246 886 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 C1orf53Q5VUE5 145 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 CRACR2BQ8N4Y2 399 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ACER1Q8TDN7 264 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ATXN2LQ8WWM7 1075 aaKnown RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ZSCAN31Q96LW9 406 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 NECAB3Q96P71 396 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 UHRF1Q96T88 793 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 DHX36Q9H2U1 1008 aaKnown RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 SH2B1Q9NRF2 756 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 FOXD4L1Q9NU39 408 aa13.07□□□□□ -0.32
SHMT2-216ENST00000554975 TLR7Q9NYK1 1049 aaKnown RBP13.07□□□□□ -0.32
SHMT2-216ENST00000554975 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms