RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 DEFB118Q96PH6 123 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 GNL3Q9BVP2 549 aaKnown RBP eCLIP14.71□□□□□ -0.055e-8■■■□□ 18.8
SHMT2-214ENST00000554604 HMX1Q9NP08 348 aaPredicted RBP14.71□□□□□ -0.05
SHMT2-214ENST00000554604 HELLSQ9NRZ9 838 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 A0A0G2JMZ2 1700 aa14.71□□□□□ -0.05
SHMT2-214ENST00000554604 SLC15A5A6NIM6 579 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 SGPL1O95470 568 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 TSPY3P0CV98 308 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 TSPY8P0CW00 308 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 DSG3P32926 999 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 SLC4A3P48751 1232 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 MAP2K5Q13163 448 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 MORN1Q5T089 497 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 TRIB2Q92519 343 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 ATG4CQ96DT6 458 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 APBA2Q99767 749 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 SPATC1LQ9H0A9 340 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.7□□□□□ -0.064e-7■□□□□ 11.2
SHMT2-214ENST00000554604 NYAP2Q9P242 653 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 CLIP2Q9UDT6 1046 aa14.7□□□□□ -0.06
SHMT2-214ENST00000554604 RPTORQ8N122 1335 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 CAPN2P17655 700 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 PTPREP23469 700 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 TRIM32Q13049 653 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 MCMDC2Q4G0Z9 681 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 FAM83BQ5T0W9 1011 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 USP6NLQ92738 828 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 FAM227BQ96M60 508 aa14.69□□□□□ -0.06
SHMT2-214ENST00000554604 MOV10L1Q9BXT6 1211 aaKnown RBP14.69□□□□□ -0.06
SHMT2-214ENST00000554604 PAK6Q9NQU5 681 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-214ENST00000554604 A0A0D9SFI3 127 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 FARP2O94887 1054 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-214ENST00000554604 TTLL1O95922 423 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 PRKAR2AP13861 404 aaKnown RBP14.68□□□□□ -0.06
SHMT2-214ENST00000554604 TFAP4Q01664 338 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 NMIQ13287 307 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-214ENST00000554604 FAM47AQ5JRC9 791 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 VPS53Q5VIR6 699 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 SNX21Q969T3 373 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 CEP95Q96GE4 821 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 FBXO28Q9NVF7 368 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 MTMR4Q9NYA4 1195 aa14.68□□□□□ -0.06
SHMT2-214ENST00000554604 IGKV6D-41A0A0C4DH26 115 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 F5H6K3 240 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 FOXP2O15409 715 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 STRNO43815 780 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 ERCC3P19447 782 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 CTDSPL2Q05D32 466 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 KLRC3Q07444 240 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 GRB14Q14449 540 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 CCL14Q16627 93 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 DPP9Q86TI2 863 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 NCAPG2Q86XI2 1143 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 SHCBP1Q8NEM2 672 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 NEDD1Q8NHV4 660 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 NUP88Q99567 741 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-214ENST00000554604 HTATIP2Q9BUP3 242 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 MROH8Q9H579 483 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 PLXNA1Q9UIW2 1896 aa14.67□□□□□ -0.06
SHMT2-214ENST00000554604 ZNF236Q9UL36 1845 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 PLIN4Q96Q06 1357 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 TSPY2A6NKD2 308 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 NDUFB10O96000 172 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 CACNB2Q08289 660 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-214ENST00000554604 ALX1Q15699 326 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 PPP4R3BQ5MIZ7 849 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 MFSD14CQ5VZR4 134 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 DPF3Q92784 378 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 MKL1Q969V6 931 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 SLF1Q9BQI6 1058 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 TOMM22Q9NS69 142 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 DIAPH3Q9NSV4 1193 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 PPP1R9AQ9ULJ8 1098 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 ISY1Q9ULR0 285 aaKnown RBP14.66□□□□□ -0.06
SHMT2-214ENST00000554604 CTDP1Q9Y5B0 961 aaPredicted RBP14.66□□□□□ -0.06
SHMT2-214ENST00000554604 CCDC171Q6TFL3 1326 aa14.66□□□□□ -0.06
SHMT2-214ENST00000554604 VWA5AO00534 786 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 RANBP6O60518 1105 aaKnown RBP14.65□□□□□ -0.06
SHMT2-214ENST00000554604 REC8O95072 547 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 SLC25A27O95847 323 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 FGAP02671 866 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 HOXC6P09630 235 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 HSPD1P10809 573 aaKnown RBP14.65□□□□□ -0.06
SHMT2-214ENST00000554604 ADORA2AP29274 412 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 TMEM132BQ14DG7 1078 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 MAP3K21Q5TCX8 1036 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 ZNF589Q86UQ0 364 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-214ENST00000554604 LRRC47Q8N1G4 583 aaKnown RBP14.65□□□□□ -0.06
SHMT2-214ENST00000554604 PRPF38AQ8NAV1 312 aaKnown RBP14.65□□□□□ -0.06
SHMT2-214ENST00000554604 CRISPLD2Q9H0B8 497 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 INCENPQ9NQS7 918 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 SLC5A4Q9NY91 659 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 ANAPC4Q9UJX5 808 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 SYNPO2Q9UMS6 1093 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 ADAMTS5Q9UNA0 930 aa14.65□□□□□ -0.06
SHMT2-214ENST00000554604 HIP1O00291 1037 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 FCER1AP12319 257 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 STAT3P40763 770 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 UBE2Q1Q7Z7E8 422 aa14.64□□□□□ -0.07
SHMT2-214ENST00000554604 KIF2CQ99661 725 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms