RNA–Protein interactions for RNA: ENST00000553846.1

PRKCH-208, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 557 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-208	ENST00000553846	HDAC5	Q9UQL6	1122 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	FPGT-TNNI3K	V9GXZ4	949 aa		11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.11	□□□□□ -0.63
PRKCH-208	ENST00000553846	BRWD1	Q9NSI6	2320 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	SYNRG	Q9UMZ2	1314 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	GREB1L	Q9C091	1923 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	MYADML2	A6NDP7	307 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	MYCN	P04198	464 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	ACLY	P53396	1101 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	POLA2	Q14181	598 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	TMEM132B	Q14DG7	1078 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	GORAB	Q5T7V8	394 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	RNF180	Q86T96	592 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	SLC44A5	Q8NCS7	719 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	REPS2	Q8NFH8	660 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	VWCE	Q96DN2	955 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	ATG4C	Q96DT6	458 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	CDCA7L	Q96GN5	454 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	TINF2	Q9BSI4	451 aa		11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	TSEN34	Q9BSV6	310 aa	Known RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	DBNL	Q9UJU6	430 aa	Known RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	YBX2	Q9Y2T7	364 aa	Known RBP	11.1	□□□□□ -0.63
PRKCH-208	ENST00000553846	ADCY6	O43306	1168 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	PGK2	P07205	417 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	GNAI3	P08754	354 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	CSF2RA	P15509	400 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	CST5	P28325	142 aa	Predicted RBP	11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	IRX5	P78411	483 aa	Predicted RBP	11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	CERS3	Q8IU89	383 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	MIGA1	Q8NAN2	632 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	GAS2L1	Q99501	681 aa	Predicted RBP	11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	TLR7	Q9NYK1	1049 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	DIS3	Q9Y2L1	958 aa	Known RBP	11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	MYH8	P13535	1937 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	LRRC37A2	A6NM11	1700 aa		11.09	□□□□□ -0.63
PRKCH-208	ENST00000553846	MCM3AP	O60318	1980 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	MOXD2P	A6NHM9	499 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	CTAGE5	O15320	804 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	CT47B1	P0C2W7	299 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	FCER1A	P12319	257 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	AKR1A1	P14550	325 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	CYP7A1	P22680	504 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	NCAPG2	Q86XI2	1143 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	RIOX2	Q8IUF8	465 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	CLEC10A	Q8IUN9	316 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	FAM126B	Q8IXS8	530 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	FAM9B	Q8IZU0	186 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	PPM1E	Q8WY54	764 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	HERVK_113	Q902F9	699 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	ARHGAP45	Q92619	1136 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	C1QTNF1	Q9BXJ1	281 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	TANGO6	Q9C0B7	1094 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	C11orf16	Q9NQ32	467 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	SLC5A4	Q9NY91	659 aa		11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	ZNF214	Q9UL59	606 aa	Predicted RBP	11.08	□□□□□ -0.64
PRKCH-208	ENST00000553846	DNAJC25-GNG10	A0A024R161	153 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	DCDC2C	A8MYV0	355 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	SNAI1	O95863	264 aa	Predicted RBP	11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	CD4	P01730	458 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	NKX3-2	P78367	333 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	TFF2	Q03403	129 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	PPIG	Q13427	754 aa	Known RBP eCLIP	11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	TTC39A	Q5SRH9	613 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	ZNF365	Q70YC5	407 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	TTC6	Q86TZ1	520 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	FGD4	Q96M96	766 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	LRFN3	Q9BTN0	628 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	UPF3A	Q9H1J1	476 aa	Known RBP	11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	ANTXR1	Q9H6X2	564 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	STARD7	Q9NQZ5	370 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	TMX2	Q9Y320	296 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	ELP1	O95163	1332 aa		11.07	□□□□□ -0.64
PRKCH-208	ENST00000553846	TRIO	O75962	3097 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	FLOT1	O75955	427 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	SLC25A27	O95847	323 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	ACR	P10323	421 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	POU3F3	P20264	500 aa	Predicted RBP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	USP5	P45974	858 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	KCNQ1	P51787	676 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	RARS	P54136	660 aa	Known RBP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	RAB30	Q15771	203 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	CCDC85B	Q15834	202 aa	Predicted RBP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	KCNA10	Q16322	511 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	PSRC1	Q6PGN9	363 aa	Predicted RBP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	TMED8	Q6PL24	325 aa	Predicted RBP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	MAMDC4	Q6UXC1	1216 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	MAGEB6	Q8N7X4	407 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	SLC43A3	Q8NBI5	491 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	SSH3	Q8TE77	659 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	NUP133	Q8WUM0	1156 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	MMP19	Q99542	508 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	NKX2-4	Q9H2Z4	354 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	VCPKMT	Q9H867	229 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	CABP5	Q9NP86	173 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	FBXO28	Q9NVF7	368 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	TNN	Q9UQP3	1299 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	MROH7	Q68CQ1	1323 aa		11.06	□□□□□ -0.64
PRKCH-208	ENST00000553846	SMIM22	K7EJ46	135 aa		11.05	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms