RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ARHGEF1Q92888 912 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 MKRN1Q9UHC7 482 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 PPP2R2CQ9Y2T4 447 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 JRKLQ9Y4A0 524 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 V9GY48 417 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 DLEC1Q9Y238 1755 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 ADAMTS3O15072 1205 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 VEGFAP15692 232 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 UBASH3AP57075 661 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 NPY5RQ15761 445 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 PTPN21Q16825 1174 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 FAM47AQ5JRC9 791 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 MSL3Q8N5Y2 521 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 HNRNPLLQ8WVV9 542 aaKnown RBP13.88□□□□□ -0.19
SHMT2-207ENST00000553837 PHF20Q9BVI0 1012 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 SERTAD1Q9UHV2 236 aa13.88□□□□□ -0.19
SHMT2-207ENST00000553837 H3BQF6 201 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 SEMA3EO15041 775 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 POLR2DO15514 142 aaKnown RBP13.87□□□□□ -0.19
SHMT2-207ENST00000553837 EIF3JO75822 258 aaKnown RBP13.87□□□□□ -0.19
SHMT2-207ENST00000553837 SATB1Q01826 763 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 SLC4A8Q2Y0W8 1093 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 HDXQ7Z353 690 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 NYXQ9GZU5 481 aa13.87□□□□□ -0.19
SHMT2-207ENST00000553837 RGL2O15211 777 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 PRPF3O43395 683 aaKnown RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 MYO1BO43795 1136 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 ZPR1O75312 459 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 SERPINC1P01008 464 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 CT47A1Q5JQC4 288 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 FAM177A1Q8N128 213 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 SRBD1Q8N5C6 995 aaKnown RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 PPM1EQ8WY54 764 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 CSRNP2Q9H175 543 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 DONSONQ9NYP3 566 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 VPS18Q9P253 973 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 SRPRBQ9Y5M8 271 aaKnown RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 A0A087X0B3 334 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 POTEB2H3BUK9 544 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 TOP1P11387 765 aaKnown RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 TUBB4BP68371 445 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 GRIK5Q16478 980 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 ZNF827Q17R98 1081 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 TMTC3Q6ZXV5 915 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 CATIPQ7Z7H3 387 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 PDILTQ8N807 584 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 CCNL1Q9UK58 526 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-207ENST00000553837 MAN1B1Q9UKM7 699 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 KIAA1551Q9HCM1 1747 aa13.86□□□□□ -0.19
SHMT2-207ENST00000553837 PDS5AQ29RF7 1337 aaKnown RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 ACTN4O43707 911 aaKnown RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 MYL5Q02045 173 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 TPTE2Q6XPS3 522 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 VSTM4Q8IW00 320 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 TNFRSF25Q93038 417 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 MED15Q96RN5 788 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 ANKRD2Q9GZV1 360 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 FANCLQ9NW38 375 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 BAZ2BQ9UIF8 2168 aaKnown RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 CNTNAP5Q8WYK1 1306 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 TMEM232C9JQI7 657 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 ORC4O43929 436 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 ERLIN1O75477 346 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 USP17L8P0C7I0 530 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 SARSP49591 514 aaKnown RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 FMR1Q06787 632 aaKnown RBP eCLIP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 POSTNQ15063 836 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 PPP2R5BQ15173 497 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 CFAP100Q494V2 611 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 IQCA1Q86XH1 822 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 EGFL6Q8IUX8 553 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 ZNF579Q8NAF0 562 aaKnown RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 GPR101Q96P66 508 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-207ENST00000553837 WDR24Q96S15 920 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 PDE11AQ9HCR9 933 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 INTS13Q9NVM9 706 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 LAMB1P07942 1786 aa13.85□□□□□ -0.19
SHMT2-207ENST00000553837 SBF2Q86WG5 1849 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 EIF3CLB5ME19 914 aaKnown RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 AKAP17AQ02040 695 aaKnown RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 HSP90AA4PQ58FG1 418 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 RCSD1Q6JBY9 416 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 CCDC91Q7Z6B0 441 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 PACS2Q86VP3 889 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 ELOA2Q8IYF1 753 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 EPSTI1Q96J88 318 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 EIF3CQ99613 913 aaKnown RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 CRNKL1Q9BZJ0 848 aaKnown RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 DEF6Q9H4E7 631 aa13.84□□□□□ -0.19
SHMT2-207ENST00000553837 RTCBQ9Y3I0 505 aaKnown RBP13.84□□□□□ -0.19
SHMT2-207ENST00000553837 STX10O60499 249 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 KRT2P35908 639 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 USP5P45974 858 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 NFIXQ14938 502 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 NBPF20Q3BBV1 942 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 NT5DC1Q5TFE4 455 aa13.83□□□□□ -0.19
SHMT2-207ENST00000553837 BAG1Q99933 345 aaPredicted RBP13.83□□□□□ -0.19
SHMT2-207ENST00000553837 DDAH1O94760 285 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 GOLGA8FQ08AF8 430 aa13.83□□□□□ -0.2
SHMT2-207ENST00000553837 GOLGA8DPQ0D2H9 430 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms