RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 SRGAP3O43295 1099 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 GPR37L1O60883 481 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 DSG3P32926 999 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 GUCY1A2P33402 732 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 USP5P45974 858 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 CDK7P50613 346 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 TTC6Q86TZ1 520 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 KLHDC9Q8NEP7 349 aa16.9■□□□□ 0.3
PRPF39-204ENST00000553605 MTIF3Q9H2K0 278 aaKnown RBP16.9■□□□□ 0.3
PRPF39-204ENST00000553605 ROBO3Q96MS0 1386 aa16.89■□□□□ 0.3
PRPF39-204ENST00000553605 A0A1W2PRG0 241 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 PGK2P07205 417 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 SEPT2Q15019 361 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 CDCA7LQ96GN5 454 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 GLT1D1Q96MS3 346 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 MMP19Q99542 508 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 PPP1R12CQ9BZL4 782 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 IL23AQ9NPF7 189 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 DIS3Q9Y2L1 958 aaKnown RBP16.89■□□□□ 0.29
PRPF39-204ENST00000553605 ELP1O95163 1332 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 ZNF521Q96K83 1311 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 SYNRGQ9UMZ2 1314 aa16.89■□□□□ 0.29
PRPF39-204ENST00000553605 SLC25A27O95847 323 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 FGBP02675 491 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 CYP2E1P05181 493 aaPredicted RBP16.88■□□□□ 0.29
PRPF39-204ENST00000553605 SHMT1P34896 483 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 ZNF792Q3KQV3 632 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 CCSAPQ6IQ19 270 aaPredicted RBP16.88■□□□□ 0.29
PRPF39-204ENST00000553605 VTI1AQ96AJ9 217 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 CNPY2Q9Y2B0 182 aa16.88■□□□□ 0.29
PRPF39-204ENST00000553605 PIEZO1Q92508 2521 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 IGSF3O75054 1194 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 FLOT1O75955 427 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 TTC39AQ5SRH9 613 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 PPP2R2DQ66LE6 453 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 ATG4CQ96DT6 458 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 MEIS3Q99687 375 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 C11orf16Q9NQ32 467 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 FAM184BQ9ULE4 1060 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 ZNFX1Q9P2E3 1918 aaKnown RBP16.87■□□□□ 0.29
PRPF39-204ENST00000553605 A0A0G2JMZ2 1700 aa16.87■□□□□ 0.29
PRPF39-204ENST00000553605 MYH1P12882 1939 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 FAM86C2PA6NEL3 165 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 ARVCFO00192 962 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 TLL1O43897 1013 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 CYP7A1P22680 504 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 CYP2C18P33260 490 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 RABGGTBP53611 331 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 KCTD2Q14681 263 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 TMEM132BQ14DG7 1078 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 ALDH1L2Q3SY69 923 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 KIAA1755Q5JYT7 1200 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 OTOP2Q7RTS6 562 aa16.86■□□□□ 0.29
PRPF39-204ENST00000553605 MYADML2A6NDP7 307 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 MPHOSPH10O00566 681 aaKnown RBP16.85■□□□□ 0.29
PRPF39-204ENST00000553605 TLR3O15455 904 aaKnown RBP16.85■□□□□ 0.29
PRPF39-204ENST00000553605 ASGR1P07306 291 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 PLCD1P51178 756 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 MTX1Q13505 466 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 CCDC158Q5M9N0 1113 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-204ENST00000553605 CERS3Q8IU89 383 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 FAM126BQ8IXS8 530 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 MIGA1Q8NAN2 632 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 PCSK9Q8NBP7 692 aaKnown RBP16.85■□□□□ 0.29
PRPF39-204ENST00000553605 KHSRPQ92945 711 aaKnown RBP eCLIP16.85■□□□□ 0.29
PRPF39-204ENST00000553605 SMC4Q9NTJ3 1288 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 COG5Q9UP83 839 aa16.85■□□□□ 0.29
PRPF39-204ENST00000553605 A0A0U1RQG5 324 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 GTPBP6O43824 516 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 DUSP11O75319 330 aaKnown RBP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 MYOGP15173 224 aa16.84■□□□□ 0.29
PRPF39-204ENST00000553605 POU3F3P20264 500 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 G3BP1Q13283 466 aaKnown RBP eCLIP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 PIH1D3Q9NQM4 214 aaKnown RBP16.84■□□□□ 0.29
PRPF39-204ENST00000553605 PCDHA11Q9Y5I1 949 aa16.84■□□□□ 0.29
PRPF39-204ENST00000553605 MTCH2Q9Y6C9 303 aa16.84■□□□□ 0.29
PRPF39-204ENST00000553605 GBF1Q92538 1859 aa16.84■□□□□ 0.29
PRPF39-204ENST00000553605 RFXAPO00287 272 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 C6orf222P0C671 652 aaPredicted RBP16.83■□□□□ 0.28
PRPF39-204ENST00000553605 CST5P28325 142 aaPredicted RBP16.83■□□□□ 0.28
PRPF39-204ENST00000553605 ZAP70P43403 619 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 IRX5P78411 483 aaPredicted RBP16.83■□□□□ 0.28
PRPF39-204ENST00000553605 MUC6Q6W4X9 2439 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 RIOX2Q8IUF8 465 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 SPICE1Q8N0Z3 855 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 SNX27Q96L92 541 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 NOB1Q9ULX3 412 aaKnown RBP16.83■□□□□ 0.28
PRPF39-204ENST00000553605 SLC4A7Q9Y6M7 1214 aa16.83■□□□□ 0.28
PRPF39-204ENST00000553605 PI4K2BG5E9Z4 385 aa16.82■□□□□ 0.28
PRPF39-204ENST00000553605 SMIM22K7EJ46 135 aa16.82■□□□□ 0.28
PRPF39-204ENST00000553605 SNAI1O95863 264 aaPredicted RBP16.82■□□□□ 0.28
PRPF39-204ENST00000553605 CD4P01730 458 aa16.82■□□□□ 0.28
PRPF39-204ENST00000553605 POLR3DP05423 398 aaPredicted RBP16.82■□□□□ 0.28
PRPF39-204ENST00000553605 MSL3Q8N5Y2 521 aaKnown RBP16.82■□□□□ 0.28
PRPF39-204ENST00000553605 SPC25Q9HBM1 224 aa16.82■□□□□ 0.28
PRPF39-204ENST00000553605 ZHX1Q9UKY1 873 aaPredicted RBP16.82■□□□□ 0.28
PRPF39-204ENST00000553605 ADAMTS5Q9UNA0 930 aa16.82■□□□□ 0.28
PRPF39-204ENST00000553605 IDH1O75874 414 aaKnown RBP16.81■□□□□ 0.28
PRPF39-204ENST00000553605 GNAI3P08754 354 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms