RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 MIGA1Q8NAN2 632 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 FANCBQ8NB91 859 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 STAG1Q8WVM7 1258 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 HNRNPLLQ8WVV9 542 aaKnown RBP6.15□□□□□ -1.43
LIMA1-212ENST00000552491 WASF1Q92558 559 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 EXOC4Q96A65 974 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 ZFP91Q96JP5 570 aaPredicted RBP6.15□□□□□ -1.43
LIMA1-212ENST00000552491 SLC4A9Q96Q91 983 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 BLZF1Q9H2G9 400 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 AATFQ9NY61 560 aaKnown RBP eCLIP6.15□□□□□ -1.43
LIMA1-212ENST00000552491 VPS18Q9P253 973 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 TRIM10Q9UDY6 481 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 BCL9LQ86UU0 1499 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 XDHP47989 1333 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 STRCQ7RTU9 1775 aa6.15□□□□□ -1.43
LIMA1-212ENST00000552491 KIF5CO60282 957 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 ATF3P18847 181 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 SLC20A2Q08357 652 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 FUT2Q10981 343 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 KRT31Q15323 416 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 NPY5RQ15761 445 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 KIF4BQ2VIQ3 1234 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 CT47A1Q5JQC4 288 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-212ENST00000552491 ADGRA1Q86SQ6 560 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 PPFIBP1Q86W92 1011 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 PIGBQ92521 554 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 CHP1Q99653 195 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 NAA15Q9BXJ9 866 aaKnown RBP6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TFR2Q9UP52 801 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 CTNND2Q9UQB3 1225 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 FAN1Q9Y2M0 1017 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 REXO2Q9Y3B8 237 aaKnown RBP6.14□□□□□ -1.43
LIMA1-212ENST00000552491 SLC4A4Q9Y6R1 1079 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 MYH13Q9UKX3 1938 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 PLEKHA8P1O95397 391 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 VEGFAP15692 232 aaPredicted RBP6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TDO2P48775 406 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TUBB4BP68371 445 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 AMPD2Q01433 879 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 SEC23AQ15436 765 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 ZNF174Q15697 407 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 NCAPH2Q6IBW4 605 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 SDR42E1Q8WUS8 393 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 LPIN2Q92539 896 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TRIM34Q9BYJ4 488 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 KRT23Q9C075 422 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TSPYL1Q9H0U9 437 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 VPS16Q9H269 839 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 CNNM2Q9H8M5 875 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 PSD3Q9NYI0 1048 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 TRMT112Q9UI30 125 aaKnown RBP6.14□□□□□ -1.43
LIMA1-212ENST00000552491 STRCP1A6NGW2 1772 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 NUP98P52948 1817 aa6.14□□□□□ -1.43
LIMA1-212ENST00000552491 COL5A2P05997 1499 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 CYP2D7A0A087X1C5 515 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 CTAGE9A4FU28 777 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TRIM75PA6NK02 468 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 LRRIQ3A6PVS8 624 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 UQCRFS1P1P0C7P4 283 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 IL2RBP14784 551 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 BCAMP50895 628 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TUBB2AQ13885 445 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 PUM3Q15397 648 aaKnown RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 E2F4Q16254 413 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 IL17AQ16552 155 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 CEP112Q8N8E3 955 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TNFRSF25Q93038 417 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 SLF1Q9BQI6 1058 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TUBB2BQ9BVA1 445 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 PHF20Q9BVI0 1012 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 PRDM11Q9NQV5 511 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ABHD10Q9NUJ1 306 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TAB2Q9NYJ8 693 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TMOD3Q9NYL9 352 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ZBTB1Q9Y2K1 713 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 BAZ2AQ9UIF9 1905 aaKnown RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ARAP2Q8WZ64 1704 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 TNKSO95271 1327 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 LRRC10BA6NIK2 292 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 WTIPA6NIX2 430 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 MYO1CO00159 1063 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 PHACTR2O75167 634 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ACTN2P35609 894 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 MAP3K12Q12852 859 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 CASP8Q14790 479 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ADGRD1Q6QNK2 874 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 HDXQ7Z353 690 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 MSL3Q8N5Y2 521 aaKnown RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ENAHQ8N8S7 591 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 GOLGA5Q8TBA6 731 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 AK7Q96M32 723 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 GSDMAQ96QA5 445 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 NAPGQ99747 312 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 HDAC6Q9UBN7 1215 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 CEP131Q9UPN4 1083 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 IQSEC3Q9UPP2 1182 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 MAPK8IP1Q9UQF2 711 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 V9GY48 417 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-212ENST00000552491 LRP5O75197 1615 aa6.13□□□□□ -1.43
LIMA1-212ENST00000552491 ITIH6Q6UXX5 1313 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms