RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 FFAR3O14843 346 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 GIPC1O14908 333 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 TGM1P22735 817 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 GNA15P30679 374 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 PRAMEF13Q5VWM6 474 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 OLFML2BQ68BL8 750 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 NLRX1Q86UT6 975 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 TSPYL5Q86VY4 417 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-209ENST00000552008 IGDCC3Q8IVU1 814 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 TMEM87AQ8NBN3 555 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 Q96M66 194 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 FAM161BQ96MY7 647 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 NECAB3Q96P71 396 aaPredicted RBP3.61□□□□□ -1.83
LIMA1-209ENST00000552008 EBF1Q9UH73 591 aa3.61□□□□□ -1.83
LIMA1-209ENST00000552008 CST3P01034 146 aaPredicted RBP3.6□□□□□ -1.83
LIMA1-209ENST00000552008 XRCC5P13010 732 aaKnown RBP3.6□□□□□ -1.83
LIMA1-209ENST00000552008 ZNF20P17024 532 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 YBX1P67809 324 aaKnown RBP3.6□□□□□ -1.83
LIMA1-209ENST00000552008 DAB2P98082 770 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 TMC4Q7Z404 712 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 HID1Q8IV36 788 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 Q8N1X5 172 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 EPS8L3Q8TE67 593 aaKnown RBP3.6□□□□□ -1.83
LIMA1-209ENST00000552008 SETDB2Q96T68 719 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 KRTAP3-1Q9BYR8 98 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 AK5Q9Y6K8 562 aa3.6□□□□□ -1.83
LIMA1-209ENST00000552008 NOTOA8MTQ0 251 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 ABLIM1O14639 778 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 EFEMP2O95967 443 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 ITGB3P05106 788 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 SDHBP21912 280 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 ACVRL1P37023 503 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 ETF1P62495 437 aaKnown RBP3.59□□□□□ -1.83
LIMA1-209ENST00000552008 NT5DC1Q5TFE4 455 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 LRFN4Q6PJG9 635 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 PI16Q6UXB8 463 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 LDHDQ86WU2 507 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 C1QTNF3Q9BXJ4 246 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 BCO2Q9BYV7 579 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 GPR62Q9BZJ7 368 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 SRCIN1Q9C0H9 1055 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 WNT10AQ9GZT5 417 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 C12orf49Q9H741 205 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 CRTAC1Q9NQ79 661 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 FAM8A1Q9UBU6 413 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 AKAP2Q9Y2D5 859 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 SAMM50Q9Y512 469 aa3.59□□□□□ -1.83
LIMA1-209ENST00000552008 TCF3P15923 654 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 BMP6P22004 513 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 VAMP1P23763 118 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 GSTT1P30711 240 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 ETV3P41162 512 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 CAP1Q01518 475 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 INPP5AQ14642 412 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 LLGL2Q6P1M3 1020 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 NXPE4Q6UWF7 544 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 LINC01599Q8WXQ3 324 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 C8orf49Q96NF6 230 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 BACH2Q9BYV9 841 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 RNF19AQ9NV58 838 aa3.58□□□□□ -1.84
LIMA1-209ENST00000552008 KIAA1522Q9P206 1035 aaPredicted RBP3.58□□□□□ -1.84
LIMA1-209ENST00000552008 SCAMP3O14828 347 aaKnown RBP3.57□□□□□ -1.84
LIMA1-209ENST00000552008 BUB1BO60566 1050 aaPredicted RBP3.57□□□□□ -1.84
LIMA1-209ENST00000552008 USP17L7P0C7H9 530 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 CNR2P34972 360 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 TEKQ02763 1124 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 USP51Q70EK9 711 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 HDXQ7Z353 690 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 RNF34Q969K3 372 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 PLPPR2Q96GM1 343 aa3.57□□□□□ -1.84
LIMA1-209ENST00000552008 TTF2Q9UNY4 1162 aaKnown RBP3.57□□□□□ -1.84
LIMA1-209ENST00000552008 NRDCO43847 1150 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 FZD7O75084 574 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 USP2O75604 605 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 RECKO95980 971 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 LMNB1P20700 586 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 ERCC5P28715 1186 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 ZNF76P36508 570 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 MRPL58Q14197 206 aaKnown RBP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 LRRC14Q15048 493 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 TAF1CQ15572 869 aaPredicted RBP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 SLC14A2Q15849 920 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 SCARA3Q6AZY7 606 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 CRIP3Q6Q6R5 217 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 TMC6Q7Z403 805 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 NLGN1Q8N2Q7 840 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 TTC9BQ8N6N2 239 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 DTWD2Q8NBA8 298 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 DDX1Q92499 740 aaKnown RBP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 LOXL4Q96JB6 756 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 RBM15Q96T37 977 aaKnown RBP eCLIP3.56□□□□□ -1.84
LIMA1-209ENST00000552008 SPATA25Q9BR10 227 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 G6PC3Q9BUM1 346 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 OSBPL7Q9BZF2 842 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 PCDHA5Q9Y5H7 936 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 DUSP10Q9Y6W6 482 aa3.56□□□□□ -1.84
LIMA1-209ENST00000552008 PAGE1O75459 146 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 PNLIPP16233 465 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 NCKAP1LP55160 1127 aa3.55□□□□□ -1.84
LIMA1-209ENST00000552008 DIEXFQ68CQ4 756 aaKnown RBP3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms