RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 XIRP2A4UGR9 3374 aa14.59□□□□□ -0.07
PTCH1-222ENST00000551425 REV3LO60673 3130 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 A0A1W2PRG0 241 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 SLC25A27O95847 323 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 USP5P45974 858 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 TFF2Q03403 129 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 SEPT2Q15019 361 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 ZNF792Q3KQV3 632 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 TMEM31Q5JXX7 168 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 LENG1Q96BZ8 264 aaPredicted RBP14.58□□□□□ -0.08
PTCH1-222ENST00000551425 NKX2-4Q9H2Z4 354 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 SMC4Q9NTJ3 1288 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 PLXNA1Q9UIW2 1896 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 ELP1O95163 1332 aa14.58□□□□□ -0.08
PTCH1-222ENST00000551425 ERC2O15083 957 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 ACRP10323 421 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 KCNQ1P51787 676 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 KCNA10Q16322 511 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 TTC39AQ5SRH9 613 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 ATG4CQ96DT6 458 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 ZNF512BQ96KM6 892 aaPredicted RBP14.57□□□□□ -0.08
PTCH1-222ENST00000551425 MMP19Q99542 508 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 MTIF3Q9H2K0 278 aaKnown RBP14.57□□□□□ -0.08
PTCH1-222ENST00000551425 YBX2Q9Y2T7 364 aaKnown RBP14.57□□□□□ -0.08
PTCH1-222ENST00000551425 SYNRGQ9UMZ2 1314 aa14.57□□□□□ -0.08
PTCH1-222ENST00000551425 E9PSI1 815 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 PGK2P07205 417 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 GNAI3P08754 354 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 CYP7A1P22680 504 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 CST5P28325 142 aaPredicted RBP14.56□□□□□ -0.08
PTCH1-222ENST00000551425 KIAA1755Q5JYT7 1200 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 CCDC158Q5M9N0 1113 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 GLT1D1Q96MS3 346 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 API5Q9BZZ5 524 aaKnown RBP14.56□□□□□ -0.08
PTCH1-222ENST00000551425 IL23AQ9NPF7 189 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 GPR108Q9NPR9 543 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 PIH1D3Q9NQM4 214 aaKnown RBP14.56□□□□□ -0.08
PTCH1-222ENST00000551425 CNPY2Q9Y2B0 182 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 SMCHD1A6NHR9 2005 aa14.56□□□□□ -0.08
PTCH1-222ENST00000551425 TRANK1O15050 2925 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 GPR37L1O60883 481 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 FLOT1O75955 427 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 ZAP70P43403 619 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 PLCD1P51178 756 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 GABPAQ06546 454 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 G3BP1Q13283 466 aaKnown RBP eCLIP14.55□□□□□ -0.08
PTCH1-222ENST00000551425 KCTD2Q14681 263 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 TMEM132BQ14DG7 1078 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 FAM126BQ8IXS8 530 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 MSL3Q8N5Y2 521 aaKnown RBP14.55□□□□□ -0.08
PTCH1-222ENST00000551425 CDCA7LQ96GN5 454 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 FAM184BQ9ULE4 1060 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 NOB1Q9ULX3 412 aaKnown RBP14.55□□□□□ -0.08
PTCH1-222ENST00000551425 ADAMTS5Q9UNA0 930 aa14.55□□□□□ -0.08
PTCH1-222ENST00000551425 ARVCFO00192 962 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 DUSP11O75319 330 aaKnown RBP14.54□□□□□ -0.08
PTCH1-222ENST00000551425 FGBP02675 491 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 POU3F3P20264 500 aaPredicted RBP14.54□□□□□ -0.08
PTCH1-222ENST00000551425 RIOX2Q8IUF8 465 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 MIGA1Q8NAN2 632 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 PCSK9Q8NBP7 692 aaKnown RBP14.54□□□□□ -0.08
PTCH1-222ENST00000551425 PPP1R12CQ9BZL4 782 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 C11orf16Q9NQ32 467 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 MYH1P12882 1939 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 MYO9BQ13459 2157 aa14.54□□□□□ -0.08
PTCH1-222ENST00000551425 TCF20Q9UGU0 1960 aaKnown RBP14.53□□□□□ -0.08
PTCH1-222ENST00000551425 A0A0U1RQG5 324 aaPredicted RBP14.53□□□□□ -0.08
PTCH1-222ENST00000551425 MYADML2A6NDP7 307 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 APBB1O00213 710 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 TLR3O15455 904 aaKnown RBP14.53□□□□□ -0.08
PTCH1-222ENST00000551425 TNNI3KQ59H18 835 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 PPP2R2DQ66LE6 453 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 TMED8Q6PL24 325 aaPredicted RBP14.53□□□□□ -0.08
PTCH1-222ENST00000551425 MICALL1Q8N3F8 863 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 DBNDD2Q9BQY9 259 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 FPGT-TNNI3KV9GXZ4 949 aa14.53□□□□□ -0.08
PTCH1-222ENST00000551425 MPHOSPH10O00566 681 aaKnown RBP14.52□□□□□ -0.09
PTCH1-222ENST00000551425 TLL1O43897 1013 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 SNAI1O95863 264 aaPredicted RBP14.52□□□□□ -0.09
PTCH1-222ENST00000551425 CD4P01730 458 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 ASGR1P07306 291 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 CYP2C18P33260 490 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 COPB2P35606 906 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 SKIV2LQ15477 1246 aaKnown RBP14.52□□□□□ -0.09
PTCH1-222ENST00000551425 TMEM179Q6ZVK1 233 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 ALYREFQ86V81 257 aaKnown RBP14.52□□□□□ -0.09
PTCH1-222ENST00000551425 COG5Q9UP83 839 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 TMX2Q9Y320 296 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 PCDHA11Q9Y5I1 949 aa14.52□□□□□ -0.09
PTCH1-222ENST00000551425 PNMA6EA0A0J9YXQ4 647 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 WDR46O15213 610 aaKnown RBP14.51□□□□□ -0.09
PTCH1-222ENST00000551425 IDH1O75874 414 aaKnown RBP14.51□□□□□ -0.09
PTCH1-222ENST00000551425 POLR3DP05423 398 aaPredicted RBP14.51□□□□□ -0.09
PTCH1-222ENST00000551425 STAT3P40763 770 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 RABGGTBP53611 331 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 SLFN5Q08AF3 891 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 MAMDC4Q6UXC1 1216 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 SIAH1Q8IUQ4 282 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 SPICE1Q8N0Z3 855 aa14.51□□□□□ -0.09
PTCH1-222ENST00000551425 MAGEB6Q8N7X4 407 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms