RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CCDC96Q2M329 555 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 APOA5Q6Q788 366 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 ANKRD23Q86SG2 305 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 IFNL1Q8IU54 200 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 NUP133Q8WUM0 1156 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 DCAF4Q8WV16 495 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 TANGO6Q9C0B7 1094 aa24.78■■□□□ 1.56
VPS29-206ENST00000549578 NAP1L2Q9ULW6 460 aaPredicted RBP24.78■■□□□ 1.56
VPS29-206ENST00000549578 FRMPD2Q68DX3 1309 aaPredicted RBP24.78■■□□□ 1.56
VPS29-206ENST00000549578 PDHXO00330 501 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 SNHG28P0DPA3 235 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 BMP3P12645 472 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 RXRAP19793 462 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 KCTD1Q719H9 257 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 ALDH8A1Q9H2A2 487 aaPredicted RBP24.77■■□□□ 1.56
VPS29-206ENST00000549578 PCNTO95613 3336 aa24.77■■□□□ 1.56
VPS29-206ENST00000549578 DDAH1O94760 285 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 NOL8Q76FK4 1167 aaKnown RBP24.76■■□□□ 1.55
VPS29-206ENST00000549578 MICU3Q86XE3 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L15C9J2P7 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L13C9JLJ4 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L11C9JVI0 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L18D6R9N7 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L22D6RA61 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L17D6RBQ6 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L19D6RCP7 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L20D6RJB6 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 GOLGA8HP0CJ92 632 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 USP17L24Q0WX57 530 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 SYNE3Q6ZMZ3 975 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 CATSPERGQ6ZRH7 1159 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 CCDC144CPQ8IYA2 1237 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 GPCPD1Q9NPB8 672 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 FBXO28Q9NVF7 368 aa24.76■■□□□ 1.55
VPS29-206ENST00000549578 GOLGA8BA8MQT2 603 aa24.75■■□□□ 1.55
VPS29-206ENST00000549578 HOXA7P31268 230 aaPredicted RBP24.75■■□□□ 1.55
VPS29-206ENST00000549578 ZNF543Q08ER8 600 aa24.75■■□□□ 1.55
VPS29-206ENST00000549578 PABPC4Q13310 644 aaKnown RBP eCLIP24.75■■□□□ 1.556e-6■■■■■ 28.1
VPS29-206ENST00000549578 REM2Q8IYK8 340 aaPredicted RBP24.75■■□□□ 1.55
VPS29-206ENST00000549578 ASCC2Q9H1I8 757 aaPredicted RBP24.75■■□□□ 1.55
VPS29-206ENST00000549578 TMEM232C9JQI7 657 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 ZBTB43O43298 467 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 PARP1P09874 1014 aaKnown RBP24.74■■□□□ 1.55
VPS29-206ENST00000549578 IRX3P78415 501 aaPredicted RBP24.74■■□□□ 1.55
VPS29-206ENST00000549578 GRM4Q14833 912 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 ANKRD1Q15327 319 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 TTBK2Q6IQ55 1244 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 SAMD1Q6SPF0 538 aaPredicted RBP24.74■■□□□ 1.55
VPS29-206ENST00000549578 SLC45A1Q9Y2W3 748 aa24.74■■□□□ 1.55
VPS29-206ENST00000549578 FLOT1O75955 427 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 CYP2C8P10632 490 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 EVCP57679 992 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 ASPRV1Q53RT3 343 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 OTUD7BQ6GQQ9 843 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 STAG2Q8N3U4 1231 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 MAD2L2Q9UI95 211 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 TPCN1Q9ULQ1 816 aa24.73■■□□□ 1.55
VPS29-206ENST00000549578 CALM1P0DP23 149 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 CALM2P0DP24 149 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 CALM3P0DP25 149 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 OSBPP22059 807 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 IKQ13123 557 aaPredicted RBP24.72■■□□□ 1.55
VPS29-206ENST00000549578 GPATCH4Q5T3I0 446 aaKnown RBP24.72■■□□□ 1.55
VPS29-206ENST00000549578 CTCFLQ8NI51 663 aaPredicted RBP24.72■■□□□ 1.55
VPS29-206ENST00000549578 CPVLQ9H3G5 476 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 ZCCHC17Q9NP64 241 aaKnown RBP24.72■■□□□ 1.55
VPS29-206ENST00000549578 PNMA3Q9UL41 463 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 HPS5Q9UPZ3 1129 aa24.72■■□□□ 1.55
VPS29-206ENST00000549578 RLFQ13129 1914 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 PALM3A6NDB9 673 aaPredicted RBP24.71■■□□□ 1.55
VPS29-206ENST00000549578 PDIA3P30101 505 aaKnown RBP24.71■■□□□ 1.55
VPS29-206ENST00000549578 SLC16A2P36021 539 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 STAT2P52630 851 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 FANCBQ8NB91 859 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 MAP3K14Q99558 947 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 P2RX7Q99572 595 aaKnown RBP24.71■■□□□ 1.55
VPS29-206ENST00000549578 FEM1BQ9UK73 627 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 PARP14Q460N5 1801 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 GOLGA8AA7E2F4 631 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 ST18O60284 1047 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 CD2BP2O95400 341 aaKnown RBP24.71■■□□□ 1.55
VPS29-206ENST00000549578 TAF1CQ15572 869 aaPredicted RBP24.71■■□□□ 1.55
VPS29-206ENST00000549578 SLF1Q9BQI6 1058 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 UBA5Q9GZZ9 404 aa24.71■■□□□ 1.55
VPS29-206ENST00000549578 METAP2P50579 478 aaKnown RBP eCLIP24.7■■□□□ 1.54
VPS29-206ENST00000549578 STK3Q13188 491 aa24.7■■□□□ 1.54
VPS29-206ENST00000549578 COG2Q14746 738 aa24.7■■□□□ 1.54
VPS29-206ENST00000549578 KIFC2Q96AC6 838 aa24.7■■□□□ 1.54
VPS29-206ENST00000549578 ZNF274Q96GC6 653 aaPredicted RBP24.7■■□□□ 1.54
VPS29-206ENST00000549578 PARK7Q99497 189 aaKnown RBP24.7■■□□□ 1.54
VPS29-206ENST00000549578 PPP1R9AQ9ULJ8 1098 aa24.7■■□□□ 1.54
VPS29-206ENST00000549578 SPDYE16A6NNV3 312 aaPredicted RBP24.69■■□□□ 1.54
VPS29-206ENST00000549578 KLRF2D3W0D1 207 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 DSG3P32926 999 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 KIF5BP33176 963 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 RCAN1P53805 252 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 HERVK_113P62684 666 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 RTN1Q16799 776 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 FAM160B2Q86V87 743 aa24.69■■□□□ 1.54
VPS29-206ENST00000549578 SMCR8Q8TEV9 937 aaPredicted RBP24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms