RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 GPR108Q9NPR9 543 aa8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 ECHDC1Q9NTX5 307 aa8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 WDR70Q9NW82 654 aa8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 CEP126Q9P2H0 1117 aa8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 GJD2Q9UKL4 321 aa8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 PA2G4Q9UQ80 394 aaKnown RBP8.52□□□□□ -1.05
DEPDC4-208ENST00000549341 EYA2O00167 538 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 ACTN4O43707 911 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 CTNND1O60716 968 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 S1PR4O95977 384 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 IFIT1P09914 478 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 MCCP23508 829 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 MFAP1P55081 439 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 RTP1P59025 263 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 SPP2Q13103 211 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 PABPC4Q13310 644 aaKnown RBP eCLIP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 PUM3Q15397 648 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 SH3BP5LQ7L8J4 393 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 KLHDC4Q8TBB5 520 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 WDR66Q8TBY9 1149 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 RUFY2Q8WXA3 655 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 RILPL2Q969X0 211 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 IPO9Q96P70 1041 aaKnown RBP8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 MRIQ9BWK5 157 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 AAASQ9NRG9 546 aa8.51□□□□□ -1.05
DEPDC4-208ENST00000549341 DDTLA6NHG4 134 aaPredicted RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 PDE8BO95263 885 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 LDHBP07195 334 aaKnown RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 GSPT1P15170 499 aaKnown RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 SDSP20132 328 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 RFX5P48382 616 aaPredicted RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 MAP3K12Q12852 859 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 LRRFIP1Q32MZ4 808 aaKnown RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 TBC1D9Q6ZT07 1266 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 DZIP1Q86YF9 867 aaKnown RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 VGLL2Q8N8G2 317 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 PROCA1Q8NCQ7 364 aaPredicted RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 IL27Q8NEV9 243 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 ADAMTS19Q8TE59 1207 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 RNPC3Q96LT9 517 aaKnown RBP8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 APBA2Q99767 749 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 PAGR1Q9BTK6 254 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 C22orf23Q9BZE7 217 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 SALL3Q9BXA9 1300 aa8.5□□□□□ -1.05
DEPDC4-208ENST00000549341 RFX7Q2KHR2 1363 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 EPB41L2O43491 1005 aaKnown RBP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 TLL1O43897 1013 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 ENTPD3O75355 529 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 ADH1BP00325 375 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 SLC5A1P13866 664 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 DNAJB2P25686 324 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 CNGA1P29973 690 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 RGS2P41220 211 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 SMAD3P84022 425 aaKnown RBP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 MTMR2Q13614 643 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 TNNI3KQ59H18 835 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 GORABQ5T7V8 394 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 WDR78Q5VTH9 848 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 TICAM2Q86XR7 235 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 ZNF280CQ8ND82 737 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 GPRC5AQ8NFJ5 357 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 OTUD7AQ8TE49 926 aaPredicted RBP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 BBXQ8WY36 941 aaPredicted RBP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 BADQ92934 168 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 EVI5LQ96CN4 794 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 TXNRD2Q9NNW7 524 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 DDX4Q9NQI0 724 aaKnown RBP8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 NDUFB9Q9Y6M9 179 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 FPGT-TNNI3KV9GXZ4 949 aa8.49□□□□□ -1.05
DEPDC4-208ENST00000549341 NR1I2O75469 434 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 BTDP43251 543 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 TFCP2Q12800 502 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 GRIN2CQ14957 1233 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 TRIM60Q495X7 471 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 CCDC158Q5M9N0 1113 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 KIAA1211Q6ZU35 1233 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 GPR142Q7Z601 462 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 TRMT44Q8IYL2 757 aaKnown RBP8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 CRIPAKQ8N1N5 446 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 TBC1D32Q96NH3 1257 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 NEUROD6Q96NK8 337 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 UHRF1Q96T88 793 aaPredicted RBP8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 CCDC8Q9H0W5 538 aaPredicted RBP8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 PORCNQ9H237 461 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 DIAPH3Q9NSV4 1193 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 TMOD4Q9NZQ9 345 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 MORF4L1Q9UBU8 362 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 STK17AQ9UEE5 414 aa8.48□□□□□ -1.05
DEPDC4-208ENST00000549341 NCOR1O75376 2440 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 DNM1LO00429 736 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 ST8SIA5O15466 376 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 WFS1O76024 890 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 XRCC5P13010 732 aaKnown RBP8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 ATP5JP18859 108 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 MAPK4P31152 587 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 HERVK_113P62684 666 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 GJC2Q5T442 439 aaPredicted RBP8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 MFSD14CQ5VZR4 134 aa8.47□□□□□ -1.05
DEPDC4-208ENST00000549341 PLEKHH3Q7Z736 793 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms