RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 BMP3P12645 472 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 HOXA7P31268 230 aaPredicted RBP20.02■□□□□ 0.8
LIG1-204ENST00000542460 USP17L24Q0WX57 530 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 SYNE3Q6ZMZ3 975 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 IFNL1Q8IU54 200 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 ZNF654Q8IZM8 581 aa20.02■□□□□ 0.8
LIG1-204ENST00000542460 RPAP3Q9H6T3 665 aaPredicted RBP20.02■□□□□ 0.8
LIG1-204ENST00000542460 ZCCHC17Q9NP64 241 aaKnown RBP20.02■□□□□ 0.8
LIG1-204ENST00000542460 PDHXO00330 501 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 IGF2BP3O00425 579 aaKnown RBP eCLIP20.02■□□□□ 0.79
LIG1-204ENST00000542460 FOXN1O15353 648 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 DDAH1O94760 285 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 PDHBP11177 359 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 TROAPQ12815 778 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 TOB2Q14106 344 aaPredicted RBP20.02■□□□□ 0.79
LIG1-204ENST00000542460 ANKRD1Q15327 319 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 FAM83BQ5T0W9 1011 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 FAM43AQ8N2R8 423 aa20.02■□□□□ 0.79
LIG1-204ENST00000542460 THSD7BQ9C0I4 1608 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 CALM1P0DP23 149 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 CALM2P0DP24 149 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 CALM3P0DP25 149 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 APOA5Q6Q788 366 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 CATSPERGQ6ZRH7 1159 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 CHMP4CQ96CF2 233 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 NUP88Q99567 741 aaPredicted RBP20.01■□□□□ 0.79
LIG1-204ENST00000542460 TANGO6Q9C0B7 1094 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 BRPF3Q9ULD4 1205 aa20.01■□□□□ 0.79
LIG1-204ENST00000542460 KLF18A0A0U1RQI7 1052 aa20■□□□□ 0.79
LIG1-204ENST00000542460 ALDH1A1P00352 501 aa20■□□□□ 0.79
LIG1-204ENST00000542460 OSBPP22059 807 aa20■□□□□ 0.79
LIG1-204ENST00000542460 EVCP57679 992 aa20■□□□□ 0.79
LIG1-204ENST00000542460 APOBRQ0VD83 1088 aa20■□□□□ 0.79
LIG1-204ENST00000542460 CCDC96Q2M329 555 aa20■□□□□ 0.79
LIG1-204ENST00000542460 GPATCH4Q5T3I0 446 aaKnown RBP20■□□□□ 0.79
LIG1-204ENST00000542460 MAP3K14Q99558 947 aa20■□□□□ 0.79
LIG1-204ENST00000542460 WBP1LQ9NX94 342 aa20■□□□□ 0.79
LIG1-204ENST00000542460 PNMA3Q9UL41 463 aa20■□□□□ 0.79
LIG1-204ENST00000542460 MYH4Q9Y623 1939 aa20■□□□□ 0.79
LIG1-204ENST00000542460 PTPRFP10586 1907 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 PARP1P09874 1014 aaKnown RBP19.99■□□□□ 0.79
LIG1-204ENST00000542460 RCAN1P53805 252 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 AK2P54819 239 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 IRX3P78415 501 aaPredicted RBP19.99■□□□□ 0.79
LIG1-204ENST00000542460 ZNF543Q08ER8 600 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 ASPRV1Q53RT3 343 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 KCTD1Q719H9 257 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 RASGRP2Q7LDG7 609 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 NUP133Q8WUM0 1156 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 FEM1BQ9UK73 627 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 ISY1Q9ULR0 285 aaKnown RBP19.99■□□□□ 0.79
LIG1-204ENST00000542460 LOC285556D6RIA3 1793 aa19.99■□□□□ 0.79
LIG1-204ENST00000542460 TMEM232C9JQI7 657 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 ZBTB43O43298 467 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 MAP2K1Q02750 393 aaPredicted RBP19.98■□□□□ 0.79
LIG1-204ENST00000542460 COG2Q14746 738 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 GRM4Q14833 912 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 TNS4Q8IZW8 715 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 CHURC1Q8WUH1 139 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 MYL10Q9BUA6 226 aa19.98■□□□□ 0.79
LIG1-204ENST00000542460 ASCC2Q9H1I8 757 aaPredicted RBP19.98■□□□□ 0.79
LIG1-204ENST00000542460 ST18O60284 1047 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 PLA2G6O60733 806 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 FLOT1O75955 427 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 KIF5BP33176 963 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 STAT2P52630 851 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 MICU3Q86XE3 530 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 CTCFLQ8NI51 663 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 ZNF274Q96GC6 653 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 GPCPD1Q9NPB8 672 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 HOXC10Q9NYD6 342 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 NAP1L2Q9ULW6 460 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 FRMPD2Q68DX3 1309 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 PALM3A6NDB9 673 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 GOLGA8HP0CJ92 632 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 CTCFP49711 727 aaPredicted RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 FAM160B2Q86V87 743 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 FANCBQ8NB91 859 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 PARK7Q99497 189 aaKnown RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 P2RX7Q99572 595 aaKnown RBP19.97■□□□□ 0.79
LIG1-204ENST00000542460 MAD2L2Q9UI95 211 aa19.97■□□□□ 0.79
LIG1-204ENST00000542460 MYPNQ86TC9 1320 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 GOLGA8BA8MQT2 603 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 CYP2C8P10632 490 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 RXRAP19793 462 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 PDIA3P30101 505 aaKnown RBP19.96■□□□□ 0.79
LIG1-204ENST00000542460 IKQ13123 557 aaPredicted RBP19.96■□□□□ 0.79
LIG1-204ENST00000542460 PPP2R5BQ15173 497 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 TAF1CQ15572 869 aaPredicted RBP19.96■□□□□ 0.79
LIG1-204ENST00000542460 BTNL9Q6UXG8 535 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 RAB11FIP4Q86YS3 637 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 PRPF38AQ8NAV1 312 aaKnown RBP19.96■□□□□ 0.79
LIG1-204ENST00000542460 SLF1Q9BQI6 1058 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 LARP6Q9BRS8 491 aaKnown RBP19.96■□□□□ 0.79
LIG1-204ENST00000542460 FBXO28Q9NVF7 368 aa19.96■□□□□ 0.79
LIG1-204ENST00000542460 KLRF2D3W0D1 207 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 CA12O43570 354 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 DSG3P32926 999 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 TTBK2Q6IQ55 1244 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 CCDC144CPQ8IYA2 1237 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms