RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 KCTD2Q14681 263 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 TMEM132BQ14DG7 1078 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 SNX17Q15036 470 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 TRIM60Q495X7 471 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 C12orf60Q5U649 245 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 FERMT2Q96AC1 680 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 GUCD1Q96NT3 240 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 MMP19Q99542 508 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 KANSL2Q9H9L4 492 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 NRBP1Q9UHY1 535 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 DDX19BQ9UMR2 479 aa18.57■□□□□ 0.56
RTN3-211ENST00000542238 USP17L12C9JPN9 530 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 USP17L21D6R901 530 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 RARBP10826 455 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 EEF2P13639 858 aaKnown RBP18.56■□□□□ 0.56
RTN3-211ENST00000542238 ATP5JP18859 108 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 SHHQ15465 462 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 FAM47AQ5JRC9 791 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 C1orf53Q5VUE5 145 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 C16orf86Q6ZW13 317 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 BADQ92934 168 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 GOPCQ9HD26 462 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 XPNPEP3Q9NQH7 507 aa18.56■□□□□ 0.56
RTN3-211ENST00000542238 CYP2D7A0A087X1C5 515 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 RAD21O60216 631 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 COPB2P35606 906 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 ZSCAN25Q6NSZ9 544 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 RNF180Q86T96 592 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 RIOX2Q8IUF8 465 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.55■□□□□ 0.56
RTN3-211ENST00000542238 HAUS7Q99871 368 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 CHMP4BQ9H444 224 aaKnown RBP18.55■□□□□ 0.56
RTN3-211ENST00000542238 PDLIM7Q9NR12 457 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 ADAMTS5Q9UNA0 930 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 SLC4A4Q9Y6R1 1079 aa18.55■□□□□ 0.56
RTN3-211ENST00000542238 PGK2P07205 417 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 STAT3P40763 770 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 UBE3CQ15386 1083 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 SLFNL1Q499Z3 407 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 TINF2Q9BSI4 451 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 PHF24Q9UPV7 400 aa18.54■□□□□ 0.56
RTN3-211ENST00000542238 DIS3Q9Y2L1 958 aaKnown RBP18.54■□□□□ 0.56
RTN3-211ENST00000542238 LAMA2P24043 3122 aaKnown RBP18.54■□□□□ 0.56
RTN3-211ENST00000542238 VWA5AO00534 786 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 C9orf50Q5SZB4 431 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 SIRT2Q8IXJ6 389 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 ZBTB40Q9NUA8 1239 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 FBXO28Q9NVF7 368 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 PPP1R9AQ9ULJ8 1098 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 COG6Q9Y2V7 657 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 TACC3Q9Y6A5 838 aa18.53■□□□□ 0.56
RTN3-211ENST00000542238 ZBED9Q6R2W3 1325 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 TRIM43BA6NCK2 446 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 SMIM22K7EJ46 135 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 TLE2Q04725 743 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 CTR9Q6PD62 1173 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 SH3RF1Q7Z6J0 888 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 TRIM43Q96BQ3 446 aaPredicted RBP18.52■□□□□ 0.56
RTN3-211ENST00000542238 CNPY2Q9Y2B0 182 aa18.52■□□□□ 0.56
RTN3-211ENST00000542238 PGK1P00558 417 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 CLTBP09497 229 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 AKR1A1P14550 325 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 SMAD3P84022 425 aaKnown RBP18.51■□□□□ 0.55
RTN3-211ENST00000542238 ZNF792Q3KQV3 632 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 FAM83BQ5T0W9 1011 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 CDX2Q99626 313 aaPredicted RBP18.51■□□□□ 0.55
RTN3-211ENST00000542238 COL25A1Q9BXS0 654 aaPredicted RBP18.51■□□□□ 0.55
RTN3-211ENST00000542238 SEMA6BQ9H3T3 888 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 ARPP21Q9UBL0 812 aaPredicted RBP18.51■□□□□ 0.55
RTN3-211ENST00000542238 UNC80Q8N2C7 3258 aa18.51■□□□□ 0.55
RTN3-211ENST00000542238 ZNF214Q9UL59 606 aaPredicted RBP18.5■□□□□ 0.55
RTN3-211ENST00000542238 ROBO3Q96MS0 1386 aa18.5■□□□□ 0.55
RTN3-211ENST00000542238 A0A1W2PQ45 241 aaPredicted RBP18.49■□□□□ 0.55
RTN3-211ENST00000542238 A0A1W2PQY0 241 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 CHGBP05060 677 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 RAG1P15918 1043 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 TAL1P17542 331 aaPredicted RBP18.49■□□□□ 0.55
RTN3-211ENST00000542238 MIER1Q8N108 512 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 MSL3Q8N5Y2 521 aaKnown RBP18.49■□□□□ 0.55
RTN3-211ENST00000542238 DDX11Q96FC9 970 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 SLF1Q9BQI6 1058 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 TEX13BQ9BXU2 312 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 LRRCC1Q9C099 1032 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 PUS7LQ9H0K6 701 aaKnown RBP18.49■□□□□ 0.55
RTN3-211ENST00000542238 MKNK2Q9HBH9 465 aa18.49■□□□□ 0.55
RTN3-211ENST00000542238 PQBP1O60828 265 aaKnown RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 ZNF865P0CJ78 1059 aaPredicted RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 SNRNP48Q6IEG0 339 aaKnown RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 REPS2Q8NFH8 660 aa18.48■□□□□ 0.55
RTN3-211ENST00000542238 RNPC3Q96LT9 517 aaKnown RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 TSEN34Q9BSV6 310 aaKnown RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 CTDP1Q9Y5B0 961 aaPredicted RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 GREB1LQ9C091 1923 aaPredicted RBP18.48■□□□□ 0.55
RTN3-211ENST00000542238 MYH4Q9Y623 1939 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 DCDC2CA8MYV0 355 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 KIAA0355O15063 1070 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 SBK1Q52WX2 424 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 PRPF38AQ8NAV1 312 aaKnown RBP18.47■□□□□ 0.55
RTN3-211ENST00000542238 MAFAQ8NHW3 353 aaPredicted RBP18.47■□□□□ 0.55
RTN3-211ENST00000542238 NUP133Q8WUM0 1156 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms