RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 SLC35G1Q2M3R5 365 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 ATL3Q6DD88 541 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 RASGRP2Q7LDG7 609 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 GOPCQ9HD26 462 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 BAZ2BQ9UIF8 2168 aaKnown RBP20.48■□□□□ 0.87
CLIP1-215ENST00000541108 POTECB2RU33 542 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 U2AF2P26368 475 aaKnown RBP eCLIP20.48■□□□□ 0.87
CLIP1-215ENST00000541108 KIF23Q02241 960 aaPredicted RBP20.48■□□□□ 0.87
CLIP1-215ENST00000541108 PRAMEF18Q5VWM3 479 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 USP48Q86UV5 1035 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 KLRG1Q96E93 195 aa20.48■□□□□ 0.87
CLIP1-215ENST00000541108 RRP36Q96EU6 259 aaKnown RBP20.48■□□□□ 0.87
CLIP1-215ENST00000541108 ATAD5Q96QE3 1844 aa20.47■□□□□ 0.87
CLIP1-215ENST00000541108 KRT85P78386 507 aa20.47■□□□□ 0.87
CLIP1-215ENST00000541108 DNM1Q05193 864 aaKnown RBP20.47■□□□□ 0.87
CLIP1-215ENST00000541108 KRT26Q7Z3Y9 468 aa20.47■□□□□ 0.87
CLIP1-215ENST00000541108 FRMPD2Q68DX3 1309 aaPredicted RBP20.47■□□□□ 0.87
CLIP1-215ENST00000541108 TCHHQ07283 1943 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 hCG_1642624A0A1W2PR95 340 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 DCAF8L1A6NGE4 600 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 NDUFB10O96000 172 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 ECE1P42892 770 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 CSPP1Q1MSJ5 1256 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 CCDC96Q2M329 555 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 FOXD4L6Q3SYB3 417 aaPredicted RBP20.46■□□□□ 0.87
CLIP1-215ENST00000541108 FOXD4L3Q6VB84 417 aaPredicted RBP20.46■□□□□ 0.87
CLIP1-215ENST00000541108 SCYL3Q8IZE3 742 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 PHF20Q9BVI0 1012 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 FOXP1Q9H334 677 aaPredicted RBP20.46■□□□□ 0.87
CLIP1-215ENST00000541108 GPCPD1Q9NPB8 672 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 SEC63Q9UGP8 760 aaKnown RBP20.46■□□□□ 0.87
CLIP1-215ENST00000541108 CFAP45Q9UL16 551 aa20.46■□□□□ 0.87
CLIP1-215ENST00000541108 hCG_1984214I3L0E3 225 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 NBR1Q14596 966 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 ZNF713Q8N859 430 aaPredicted RBP20.45■□□□□ 0.86
CLIP1-215ENST00000541108 TMEM87AQ8NBN3 555 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 ACER1Q8TDN7 264 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 WRNIP1Q96S55 665 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 SCAND2PQ9GZW5 306 aaPredicted RBP20.45■□□□□ 0.86
CLIP1-215ENST00000541108 UBA5Q9GZZ9 404 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 VCPKMTQ9H867 229 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 VPS54Q9P1Q0 977 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 BMP3P12645 472 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 INPP5BP32019 993 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 KCTD1Q719H9 257 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 CHAMP1Q96JM3 812 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 BARHL2Q9NY43 387 aa20.45■□□□□ 0.86
CLIP1-215ENST00000541108 SSC5DA1L4H1 1573 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 RAD21O60216 631 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 PPP1R12BO60237 982 aaPredicted RBP20.44■□□□□ 0.86
CLIP1-215ENST00000541108 GNL2Q13823 731 aaKnown RBP20.44■□□□□ 0.86
CLIP1-215ENST00000541108 NOL9Q5SY16 702 aaKnown RBP20.44■□□□□ 0.86
CLIP1-215ENST00000541108 FAM173BQ6P4H8 233 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 BTNL9Q6UXG8 535 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 DIS3L2Q8IYB7 885 aaKnown RBP20.44■□□□□ 0.86
CLIP1-215ENST00000541108 ADGRF4Q8IZF3 695 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 MTMR8Q96EF0 704 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 ZNF396Q96N95 335 aaPredicted RBP20.44■□□□□ 0.86
CLIP1-215ENST00000541108 CPVLQ9H3G5 476 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 BRMS1Q9HCU9 246 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 KCNJ14Q9UNX9 436 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 CNPY2Q9Y2B0 182 aa20.44■□□□□ 0.86
CLIP1-215ENST00000541108 USP2O75604 605 aaPredicted RBP20.43■□□□□ 0.86
CLIP1-215ENST00000541108 CALML3P27482 149 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 TTBK2Q6IQ55 1244 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 GALNT17Q6IS24 598 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 CCDC148Q8NFR7 591 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 CCDC12Q8WUD4 166 aaPredicted RBP20.43■□□□□ 0.86
CLIP1-215ENST00000541108 PIGSQ96S52 555 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 WDR18Q9BV38 432 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 KIAA1683Q9H0B3 1180 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 JMJD4Q9H9V9 463 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 AS3MTQ9HBK9 375 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 VAT1LQ9HCJ6 419 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 PICK1Q9NRD5 415 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 LMBRD1Q9NUN5 540 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 DOCK1Q14185 1865 aa20.43■□□□□ 0.86
CLIP1-215ENST00000541108 PNMA6FA0A0J9YX94 578 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 KIF28PB7ZC32 967 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 ADM5C9JUS6 153 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 PLA2G6O60733 806 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 VEGFAP15692 232 aaPredicted RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 NCLP19338 710 aaKnown RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 NF2P35240 595 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 SKOR2Q2VWA4 1001 aaPredicted RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 EAPPQ56P03 285 aaPredicted RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 PIBF1Q8WXW3 757 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 LPAR1Q92633 364 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 SHISA4Q96DD7 197 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 BTBD18B2RXH4 712 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 PRPF40AO75400 957 aaKnown RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 KRT2P35908 639 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 MYSM1Q5VVJ2 828 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 NOSTRINQ8IVI9 506 aa20.42■□□□□ 0.86
CLIP1-215ENST00000541108 ZKSCAN4Q969J2 545 aaPredicted RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.42■□□□□ 0.86
CLIP1-215ENST00000541108 MYH15Q9Y2K3 1946 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 USP17L10C9JJH3 530 aa20.41■□□□□ 0.86
CLIP1-215ENST00000541108 ZBTB5O15062 677 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms