RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 TSPY3P0CV98 308 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 TSPY8P0CW00 308 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 CCL5P13501 91 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 FAM83BQ5T0W9 1011 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 SHCBP1Q8NEM2 672 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 REPS2Q8NFH8 660 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 SHISA4Q96DD7 197 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 TMEM106CQ9BVX2 250 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 MOV10L1Q9BXT6 1211 aaKnown RBP16.85■□□□□ 0.29
USP28-209ENST00000540925 SPATC1LQ9H0A9 340 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 DIAPH3Q9NSV4 1193 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 PPP1R9AQ9ULJ8 1098 aa16.85■□□□□ 0.29
USP28-209ENST00000540925 GRB14Q14449 540 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 NKX2-3Q8TAU0 364 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 TRIB2Q92519 343 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 NUP88Q99567 741 aaPredicted RBP16.84■□□□□ 0.29
USP28-209ENST00000540925 NUDT12Q9BQG2 462 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 DSCC1Q9BVC3 393 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 UNC93B1Q9H1C4 597 aa16.84■□□□□ 0.29
USP28-209ENST00000540925 PAK6Q9NQU5 681 aaPredicted RBP16.84■□□□□ 0.29
USP28-209ENST00000540925 COL11A1P12107 1806 aaPredicted RBP16.84■□□□□ 0.29
USP28-209ENST00000540925 SLC15A5A6NIM6 579 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 VWA5AO00534 786 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 NMT2O60551 498 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 HMGCRP04035 888 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 GJB1P08034 283 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 HOXC6P09630 235 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 PCP11498 1178 aaKnown RBP16.83■□□□□ 0.28
USP28-209ENST00000540925 PTPREP23469 700 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 UBXN2AP68543 259 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 TMEM132BQ14DG7 1078 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 MAP3K21Q5TCX8 1036 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 TBC1D10CQ8IV04 446 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 STAG1Q8WVM7 1258 aa16.83■□□□□ 0.28
USP28-209ENST00000540925 RAD50Q92878 1312 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 TSPY2A6NKD2 308 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 MYCP01106 439 aaPredicted RBP16.82■□□□□ 0.28
USP28-209ENST00000540925 CYP2B6P20813 491 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 CHMLP26374 656 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 GJA8P48165 433 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 TRIM32Q13049 653 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 MAP2K5Q13163 448 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 AKNAD1Q5T1N1 836 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 UBE2Q1Q7Z7E8 422 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 LRRC47Q8N1G4 583 aaKnown RBP16.82■□□□□ 0.28
USP28-209ENST00000540925 APBA2Q99767 749 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 TCP11L1Q9NUJ3 509 aa16.82■□□□□ 0.28
USP28-209ENST00000540925 ZNF214Q9UL59 606 aaPredicted RBP16.82■□□□□ 0.28
USP28-209ENST00000540925 RANBP6O60518 1105 aaKnown RBP16.81■□□□□ 0.28
USP28-209ENST00000540925 ERCC3P19447 782 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 RGS2P41220 211 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 HAND2P61296 217 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 PPP4R3BQ5MIZ7 849 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 CENPQQ7L2Z9 268 aaPredicted RBP16.81■□□□□ 0.28
USP28-209ENST00000540925 GMCL1Q96IK5 515 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 SLF1Q9BQI6 1058 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 RNF208Q9H0X6 261 aa16.81■□□□□ 0.28
USP28-209ENST00000540925 BIN2Q9UBW5 565 aaPredicted RBP16.81■□□□□ 0.28
USP28-209ENST00000540925 NEDD4P46934 1319 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 ATP2A1O14983 1001 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 STRNO43815 780 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 CCL14Q16627 93 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 SLFN13Q68D06 897 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 RCSD1Q6JBY9 416 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 RIOX2Q8IUF8 465 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 CCAR1Q8IX12 1150 aaKnown RBP16.8■□□□□ 0.28
USP28-209ENST00000540925 TRMT44Q8IYL2 757 aaKnown RBP16.8■□□□□ 0.28
USP28-209ENST00000540925 ABRAQ8N0Z2 381 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 PRPF38AQ8NAV1 312 aaKnown RBP16.8■□□□□ 0.28
USP28-209ENST00000540925 CRISPLD2Q9H0B8 497 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 MROH8Q9H579 483 aa16.8■□□□□ 0.28
USP28-209ENST00000540925 BMP3P12645 472 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 NT5C2P49902 561 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 MFSD6Q6ZSS7 791 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 SLC38A10Q9HBR0 1119 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 FLRT1Q9NZU1 646 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 FEM1BQ9UK73 627 aa16.79■□□□□ 0.28
USP28-209ENST00000540925 RPTORQ8N122 1335 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 ZNF213O14771 459 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 RAD21O60216 631 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 PLA2G6O60733 806 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 SGPL1O95470 568 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 SLC25A27O95847 323 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 ADORA2AP29274 412 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP28-209ENST00000540925 NPLOC4Q8TAT6 608 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 U2AF1L4Q8WU68 220 aaKnown RBP16.78■□□□□ 0.28
USP28-209ENST00000540925 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.78■□□□□ 0.28
USP28-209ENST00000540925 RNF41Q9H4P4 317 aaPredicted RBP16.78■□□□□ 0.28
USP28-209ENST00000540925 STX8Q9UNK0 236 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 IVNS1ABPQ9Y6Y0 642 aa16.78■□□□□ 0.28
USP28-209ENST00000540925 SGSM2O43147 1006 aa16.77■□□□□ 0.28
USP28-209ENST00000540925 COBLO75128 1261 aa16.77■□□□□ 0.28
USP28-209ENST00000540925 PRKAR2AP13861 404 aaKnown RBP16.77■□□□□ 0.28
USP28-209ENST00000540925 ZKSCAN1P17029 563 aaPredicted RBP16.77■□□□□ 0.28
USP28-209ENST00000540925 CAPN2P17655 700 aa16.77■□□□□ 0.28
USP28-209ENST00000540925 STAT3P40763 770 aa16.77■□□□□ 0.28
USP28-209ENST00000540925 CACNB2Q08289 660 aaPredicted RBP16.77■□□□□ 0.28
USP28-209ENST00000540925 RASGRP2Q7LDG7 609 aa16.77■□□□□ 0.28
USP28-209ENST00000540925 TMEM47Q9BQJ4 181 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms