RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 SPON1Q9HCB6 807 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 MYO1AQ9UBC5 1043 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 SRP68Q9UHB9 627 aaKnown RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 ZHX1Q9UKY1 873 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-233ENST00000535896 PPP2R2CQ9Y2T4 447 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 RIPOR2Q9Y4F9 1068 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 FHOD1Q9Y613 1164 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 PARP3Q9Y6F1 533 aa7.21□□□□□ -1.25
SYNE1-233ENST00000535896 SRCAPQ6ZRS2 3230 aa7.21□□□□□ -1.26
SYNE1-233ENST00000535896 A0A1B0GTH6 734 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TCRBV5S4A2TA0A5A2 114 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ANKRD18BA2A2Z9 1011 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 VWA3AA6NCI4 1184 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 IGSF3O75054 1194 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PDE8BO95263 885 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ZBTB7AO95365 584 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CCDC175P0C221 793 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CYP2C19P33261 490 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MCAMP43121 646 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PLCD1P51178 756 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CTSWP56202 376 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SLC20A2Q08357 652 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TRIM14Q14142 442 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MORC3Q14149 939 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 BRD3Q15059 726 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PUM3Q15397 648 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ERCC6LQ2NKX8 1250 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MUM1L1Q5H9M0 696 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 METTL24Q5JXM2 366 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SLC9C2Q5TAH2 1124 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SMIM5Q71RC9 77 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CHST3Q7LGC8 479 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TBC1D10CQ8IV04 446 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TXLNBQ8N3L3 684 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 IGDCC4Q8TDY8 1250 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 HNRNPLLQ8WVV9 542 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 LPIN2Q92539 896 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SMARCE1Q969G3 411 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 FERMT2Q96AC1 680 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 AIDAQ96BJ3 306 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 RNF26Q9BY78 433 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 NACAP1Q9BZK3 213 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PDGFDQ9GZP0 370 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF446Q9NWS9 450 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 AATFQ9NY61 560 aaKnown RBP eCLIP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PSD3Q9NYI0 1048 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 FAM198AQ9UFP1 575 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SRPRBQ9Y5M8 271 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MRFAP1Q9Y605 127 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SLC12A7Q9Y666 1083 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MYH1P12882 1939 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MYH8P13535 1937 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PATL2C9JE40 543 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 BIN1O00499 593 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ATP1A3P13637 1013 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PDE6AP16499 860 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ADORA1P30542 326 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CASQ1P31415 396 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 GGCXP38435 758 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 HAND2P61296 217 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 SPAG1Q07617 926 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 MAP3K12Q12852 859 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 NAA30Q147X3 362 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PARP10Q53GL7 1025 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TMEM67Q5HYA8 995 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 AKNAD1Q5T1N1 836 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 RSRC2Q7L4I2 434 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CNGA4Q8IV77 575 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 FAM177A1Q8N128 213 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CEP112Q8N8E3 955 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 GOLGA1Q92805 767 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TATDN2Q93075 761 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ZNF594Q96JF6 807 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 GSDMAQ96QA5 445 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 STRBPQ96SI9 672 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PUS3Q9BZE2 481 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 GBP3Q9H0R5 595 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 ZBTB3Q9H5J0 574 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 RAI14Q9P0K7 980 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 FBXO2Q9UK22 296 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 TTF2Q9UNY4 1162 aaKnown RBP7.2□□□□□ -1.26
SYNE1-233ENST00000535896 PCDHA5Q9Y5H7 936 aa7.2□□□□□ -1.26
SYNE1-233ENST00000535896 CCDC88AQ3V6T2 1871 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 A0A0G2JLW4 131 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 ERICH2A1L162 156 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 C3orf80F5H4A9 247 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 RANBP6O60518 1105 aaKnown RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 PDE8AO60658 829 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 MMP10P09238 476 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 CALM1P0DP23 149 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 CALM2P0DP24 149 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 CALM3P0DP25 149 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 SLC5A1P13866 664 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 FGFR2P21802 821 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 ITGA6P23229 1130 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 MARCKSP29966 332 aaPredicted RBP7.19□□□□□ -1.26
SYNE1-233ENST00000535896 CDC27P30260 824 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 TM4SF1P30408 202 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 USP5P45974 858 aa7.19□□□□□ -1.26
SYNE1-233ENST00000535896 TRAPPC10P48553 1259 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms