RNA–Protein interactions for RNA: ENST00000533499.1

NXF1-216, Transcript of nuclear RNA export factor 1, humanhuman

TSL 5

Gene NXF1, Length 936 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NXF1-216ENST00000533499 USP17L20D6RJB6 530 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 WDR46O15213 610 aaKnown RBP20.41■□□□□ 0.86
NXF1-216ENST00000533499 GOLGA8HP0CJ92 632 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 BMP3P12645 472 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 RXRAP19793 462 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 LIFRP42702 1097 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 NOVP48745 357 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 USP17L24Q0WX57 530 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 GPAT2Q6NUI2 795 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 ANKRD23Q86SG2 305 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 CCDC144CPQ8IYA2 1237 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 REM2Q8IYK8 340 aaPredicted RBP20.41■□□□□ 0.86
NXF1-216ENST00000533499 ZNF654Q8IZM8 581 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 DCAF4Q8WV16 495 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 SYNPO2Q9UMS6 1093 aa20.41■□□□□ 0.86
NXF1-216ENST00000533499 TESPA1A2RU30 521 aaPredicted RBP20.4■□□□□ 0.86
NXF1-216ENST00000533499 TMEM232C9JQI7 657 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 LOC285556D6RIA3 1793 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 FLOT1O75955 427 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 TM4SF4P48230 202 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 TAF1CQ15572 869 aaPredicted RBP20.4■□□□□ 0.86
NXF1-216ENST00000533499 MICU3Q86XE3 530 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 BEGAINQ9BUH8 593 aa20.4■□□□□ 0.86
NXF1-216ENST00000533499 DHX16O60231 1041 aaKnown RBP20.39■□□□□ 0.85
NXF1-216ENST00000533499 PARP1P09874 1014 aaKnown RBP20.39■□□□□ 0.85
NXF1-216ENST00000533499 CYP2C8P10632 490 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 PDHBP11177 359 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 RABEP1Q15276 862 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 DNAJC5GQ8N7S2 189 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 SMCR8Q8TEV9 937 aaPredicted RBP20.39■□□□□ 0.85
NXF1-216ENST00000533499 KIF2CQ99661 725 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 PNMA3Q9UL41 463 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 BRPF3Q9ULD4 1205 aa20.39■□□□□ 0.85
NXF1-216ENST00000533499 GOLGA8BA8MQT2 603 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 TRPA1O75762 1119 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 AK2P54819 239 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 CATSPERGQ6ZRH7 1159 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 CTCFLQ8NI51 663 aaPredicted RBP20.38■□□□□ 0.85
NXF1-216ENST00000533499 GMCL1Q96IK5 515 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 PARK7Q99497 189 aaKnown RBP20.38■□□□□ 0.85
NXF1-216ENST00000533499 ASCC2Q9H1I8 757 aaPredicted RBP20.38■□□□□ 0.85
NXF1-216ENST00000533499 FBXO28Q9NVF7 368 aa20.38■□□□□ 0.85
NXF1-216ENST00000533499 CTDP1Q9Y5B0 961 aaPredicted RBP20.38■□□□□ 0.85
NXF1-216ENST00000533499 ZBTB43O43298 467 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 DDAH1O94760 285 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 ALDH1A1P00352 501 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 SLC16A2P36021 539 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 MAP2K1Q02750 393 aaPredicted RBP20.37■□□□□ 0.85
NXF1-216ENST00000533499 TOB2Q14106 344 aaPredicted RBP20.37■□□□□ 0.85
NXF1-216ENST00000533499 TTBK2Q6IQ55 1244 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 KIFC2Q96AC6 838 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 IL17RAQ96F46 866 aa20.37■□□□□ 0.85
NXF1-216ENST00000533499 P2RX7Q99572 595 aaKnown RBP20.37■□□□□ 0.85
NXF1-216ENST00000533499 GOLGA8AA7E2F4 631 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 CALM1P0DP23 149 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 CALM2P0DP24 149 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 CALM3P0DP25 149 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 ZNF543Q08ER8 600 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 STK3Q13188 491 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 GRM4Q14833 912 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 ANKRD1Q15327 319 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 APOA5Q6Q788 366 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 SGMS1Q86VZ5 419 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 SLF1Q9BQI6 1058 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 PAGR1Q9BTK6 254 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 UBA5Q9GZZ9 404 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 CPVLQ9H3G5 476 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 ZFYVE28Q9HCC9 887 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 RNF186Q9NXI6 227 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 FEM1BQ9UK73 627 aa20.36■□□□□ 0.85
NXF1-216ENST00000533499 ST18O60284 1047 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 TBC1D8O95759 1140 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 HOXA7P31268 230 aaPredicted RBP20.35■□□□□ 0.85
NXF1-216ENST00000533499 KIF5BP33176 963 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 STAT2P52630 851 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 TROAPQ12815 778 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 COG2Q14746 738 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 ASPRV1Q53RT3 343 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 CHURC1Q8WUH1 139 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 VAT1LQ9HCJ6 419 aa20.35■□□□□ 0.85
NXF1-216ENST00000533499 ECM2O94769 699 aaPredicted RBP20.34■□□□□ 0.85
NXF1-216ENST00000533499 SLC4A3P48751 1232 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 METAP2P50579 478 aaKnown RBP eCLIP20.34■□□□□ 0.85
NXF1-216ENST00000533499 HERVK_113P62684 666 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 CCT2P78371 535 aaKnown RBP20.34■□□□□ 0.85
NXF1-216ENST00000533499 CRHR2Q13324 411 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 RTN1Q16799 776 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 GPATCH4Q5T3I0 446 aaKnown RBP20.34■□□□□ 0.85
NXF1-216ENST00000533499 STAG2Q8N3U4 1231 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 ATG4CQ96DT6 458 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 HOXC10Q9NYD6 342 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 TSKSQ9UJT2 592 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 SLC45A1Q9Y2W3 748 aa20.34■□□□□ 0.85
NXF1-216ENST00000533499 KLRF2D3W0D1 207 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 SNHG28P0DPA3 235 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 DSG3P32926 999 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 SNAP25P60880 206 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 PLS1Q14651 629 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 SYDE2Q5VT97 1194 aa20.33■□□□□ 0.85
NXF1-216ENST00000533499 FAM160B2Q86V87 743 aa20.33■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms