RNA–Protein interactions for RNA: ENST00000533299.2

LMO7-223, Transcript of LIM domain 7, human

TSL 3

Gene LMO7, Length 1,845 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-223	ENST00000533299	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	SLITRK5	O94991	958 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	GTF2F1	P35269	517 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	RNF4	P78317	190 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	BBS9	Q3SYG4	887 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	SFRP5	Q5T4F7	317 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	ZNF765	Q7L2R6	523 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	CDH24	Q86UP0	819 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	PI4K2B	Q8TCG2	481 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	ANTXR1	Q9H6X2	564 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	PRKAG3	Q9UGI9	489 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	MRVI1	Q9Y6F6	885 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	DNAJA2	O60884	412 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	CLEC3A	O75596	197 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	KIR3DL1	P43629	444 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	CASP7	P55210	303 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	BAHD1	Q8TBE0	780 aa	Predicted RBP	5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	MKNK2	Q9HBH9	465 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	LRRC4C	Q9HCJ2	640 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	KCNH3	Q9ULD8	1083 aa		5.2	□□□□□ -1.58
LMO7-223	ENST00000533299	U2SURP	O15042	1029 aa	Known RBP	5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	LEFTY1	O75610	366 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	KRT1	P04264	644 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	SYN1	P17600	705 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	KCNMB1	Q16558	191 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	RNF141	Q8WVD5	230 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	UBXN4	Q92575	508 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	ASPN	Q9BXN1	380 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	ZNF408	Q9H9D4	720 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	ACTR10	Q9NZ32	417 aa		5.19	□□□□□ -1.58
LMO7-223	ENST00000533299	EOMES	O95936	686 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	TTC6	Q86TZ1	520 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	SMARCC1	Q92922	1105 aa	Predicted RBP	5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	TRIM55	Q9BYV6	548 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	PHAX	Q9H814	394 aa	Known RBP	5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	ADAMTS6	Q9UKP5	1117 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	SMAD7	O15105	426 aa	Known RBP	5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	ETFB	P38117	255 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	KRTAP10-2	P60368	255 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	NBPF6	Q5VWK0	638 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	UNC5A	Q6ZN44	842 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	RUFY4	Q6ZNE9	571 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	C22orf34	Q6ZV56	151 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	DNAJB8	Q8NHS0	232 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	NBPF4	Q96M43	638 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	KREMEN1	Q96MU8	473 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	SLC9A7	Q96T83	725 aa		5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	ASCC2	Q9H1I8	757 aa	Predicted RBP	5.18	□□□□□ -1.58
LMO7-223	ENST00000533299	FAM155A	B1AL88	458 aa	Predicted RBP	5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	SUV39H1	O43463	412 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	UBOX5	O94941	541 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	FXN	Q16595	210 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	CIAPIN1	Q6FI81	312 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	ANKS3	Q6ZW76	656 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	RIN3	Q8TB24	985 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	PPP1R13L	Q8WUF5	828 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	SLC6A18	Q96N87	628 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	USP35	Q9P2H5	1018 aa		5.17	□□□□□ -1.58
LMO7-223	ENST00000533299	SUCO	Q9UBS9	1254 aa	Known RBP	5.17	□□□□□ -1.58
LMO7-223	ENST00000533299		A0A1W2PQH9	124 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	NPIPB6	E9PJ23	425 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	CBX7	O95931	251 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	ACR	P10323	421 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	CD8B	P10966	210 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	POLR2B	P30876	1174 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	PMS1	P54277	932 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	MFSD4A	Q8N468	514 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	PIWIL2	Q8TC59	973 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	MKRN2	Q9H000	416 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	PARD6A	Q9NPB6	346 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	FAM86C2P	A6NEL3	165 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	NAT2	P11245	290 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	SLC7A5	Q01650	507 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	RBL2	Q08999	1139 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	BNIP3	Q12983	259 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	NCAPH	Q15003	741 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	CCDC144CP	Q8IYA2	1237 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	FAM169B	Q8N8A8	192 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	NETO1	Q8TDF5	533 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	DHX38	Q92620	1227 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	HEXIM2	Q96MH2	286 aa	Known RBP	5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	VAV3	Q9UKW4	847 aa		5.16	□□□□□ -1.58
LMO7-223	ENST00000533299	TMEM265	A0A087WTH1	108 aa		5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	CEACAM5	P06731	702 aa		5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	IFI16	Q16666	785 aa	Known RBP	5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	GNPTAB	Q3T906	1256 aa		5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	NBPF12	Q5TAG4	269 aa	Predicted RBP	5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	LARP1B	Q659C4	914 aa	Known RBP	5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	FAM214B	Q7L5A3	538 aa		5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	TRIT1	Q9H3H1	467 aa	Known RBP	5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	ZNF214	Q9UL59	606 aa	Predicted RBP	5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	SNX11	Q9Y5W9	270 aa		5.15	□□□□□ -1.59
LMO7-223	ENST00000533299	CLCN7	P51798	805 aa		5.14	□□□□□ -1.59
LMO7-223	ENST00000533299	TCEAL1	Q15170	157 aa		5.14	□□□□□ -1.59
LMO7-223	ENST00000533299	VHLL	Q6RSH7	139 aa		5.14	□□□□□ -1.59
LMO7-223	ENST00000533299	TMEM192	Q8IY95	271 aa		5.14	□□□□□ -1.59
LMO7-223	ENST00000533299	DDAH1	O94760	285 aa		5.13	□□□□□ -1.59
LMO7-223	ENST00000533299	ITIH2	P19823	946 aa		5.13	□□□□□ -1.59
LMO7-223	ENST00000533299	OXCT1	P55809	520 aa		5.13	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms