RNA–Protein interactions for RNA: ENST00000533299.2

LMO7-223, Transcript of LIM domain 7, human

TSL 3

Gene LMO7, Length 1,845 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LMO7-223	ENST00000533299	AEBP2	Q6ZN18	517 aa	Predicted RBP	23.01	■■□□□ 1.27
LMO7-223	ENST00000533299	CHIC1	Q5VXU3	224 aa		21.62	■■□□□ 1.05
LMO7-223	ENST00000533299	SENP3	Q9H4L4	574 aa	Predicted RBP	19.9	■□□□□ 0.78
LMO7-223	ENST00000533299	PHF23	Q9BUL5	403 aa	Predicted RBP	19.44	■□□□□ 0.7
LMO7-223	ENST00000533299	POTED	Q86YR6	584 aa		18.82	■□□□□ 0.6
LMO7-223	ENST00000533299	FOXD1	Q16676	465 aa		18.56	■□□□□ 0.56
LMO7-223	ENST00000533299	MSH5	O43196	834 aa		17.84	■□□□□ 0.45
LMO7-223	ENST00000533299	PIAS4	Q8N2W9	510 aa	Predicted RBP	17.13	■□□□□ 0.33
LMO7-223	ENST00000533299	PPP6R1	Q9UPN7	881 aa		16.61	■□□□□ 0.25
LMO7-223	ENST00000533299	ADRA2B	P18089	450 aa		16.51	■□□□□ 0.23
LMO7-223	ENST00000533299	PLPPR3	Q6T4P5	718 aa		16.47	■□□□□ 0.23
LMO7-223	ENST00000533299	CACNB1	Q02641	598 aa	Predicted RBP	15.77	■□□□□ 0.11
LMO7-223	ENST00000533299	DMRT2	Q9Y5R5	561 aa		15.63	■□□□□ 0.09
LMO7-223	ENST00000533299	MAPK8IP2	Q13387	824 aa	Predicted RBP	15.41	■□□□□ 0.06
LMO7-223	ENST00000533299	SCAF1	Q9H7N4	1312 aa	Known RBP	15.29	■□□□□ 0.04
LMO7-223	ENST00000533299	RNF39	Q9H2S5	420 aa		15.08	■□□□□ 0
LMO7-223	ENST00000533299	DCAF8L1	A6NGE4	600 aa		14.92	□□□□□ -0.02
LMO7-223	ENST00000533299	C1QBP	Q07021	282 aa	Known RBP	14.86	□□□□□ -0.03
LMO7-223	ENST00000533299	HOXD11	P31277	338 aa	Predicted RBP	14.72	□□□□□ -0.05
LMO7-223	ENST00000533299	POTEH	Q6S545	545 aa		14.58	□□□□□ -0.08
LMO7-223	ENST00000533299	DNAJC5B	Q9UF47	199 aa		14.52	□□□□□ -0.09
LMO7-223	ENST00000533299	RNF216	Q9NWF9	866 aa	Predicted RBP	14.37	□□□□□ -0.11
LMO7-223	ENST00000533299	PPP4R3CP	Q6ZMV5	832 aa		14.27	□□□□□ -0.12
LMO7-223	ENST00000533299	CNKSR2	Q8WXI2	1034 aa		14.27	□□□□□ -0.13
LMO7-223	ENST00000533299	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.97	□□□□□ -0.17
LMO7-223	ENST00000533299	DSG3	P32926	999 aa		13.79	□□□□□ -0.2
LMO7-223	ENST00000533299	CAPN15	O75808	1086 aa		13.64	□□□□□ -0.23
LMO7-223	ENST00000533299	SPINK5	Q9NQ38	1064 aa	Predicted RBP	13.57	□□□□□ -0.24
LMO7-223	ENST00000533299		U3KPZ7	1027 aa	Predicted RBP	13.55	□□□□□ -0.24
LMO7-223	ENST00000533299	NCBP3	Q53F19	620 aa	Known RBP	13.54	□□□□□ -0.24
LMO7-223	ENST00000533299	RBM42	Q9BTD8	480 aa	Known RBP	13.28	□□□□□ -0.28
LMO7-223	ENST00000533299	SP7	Q8TDD2	431 aa	Predicted RBP	13.27	□□□□□ -0.29
LMO7-223	ENST00000533299	APLP2	Q06481	763 aa		13.26	□□□□□ -0.29
LMO7-223	ENST00000533299	CHRDL2	Q6WN34	429 aa		13.25	□□□□□ -0.29
LMO7-223	ENST00000533299	NPM3	O75607	178 aa	Known RBP	13.23	□□□□□ -0.29
LMO7-223	ENST00000533299	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.23	□□□□□ -0.29
LMO7-223	ENST00000533299	ABCB7	O75027	752 aa		13.19	□□□□□ -0.3
LMO7-223	ENST00000533299	TRH	P20396	242 aa	Predicted RBP	13.18	□□□□□ -0.3
LMO7-223	ENST00000533299	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	12.99	□□□□□ -0.33
LMO7-223	ENST00000533299	HNRNPUL2	Q1KMD3	747 aa	Known RBP	12.99	□□□□□ -0.33
LMO7-223	ENST00000533299	SLC4A2	P04920	1241 aa		12.85	□□□□□ -0.35
LMO7-223	ENST00000533299	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.83	□□□□□ -0.35
LMO7-223	ENST00000533299	AKT1S1	Q96B36	256 aa		12.76	□□□□□ -0.37
LMO7-223	ENST00000533299	HAX1	O00165	279 aa		12.74	□□□□□ -0.37
LMO7-223	ENST00000533299	PIP4P2	Q8N4L2	257 aa		12.74	□□□□□ -0.37
LMO7-223	ENST00000533299	POLA2	Q14181	598 aa		12.64	□□□□□ -0.39
LMO7-223	ENST00000533299	REM2	Q8IYK8	340 aa	Predicted RBP	12.58	□□□□□ -0.4
LMO7-223	ENST00000533299	FXR2	P51116	673 aa	Known RBP eCLIP	12.56	□□□□□ -0.4
LMO7-223	ENST00000533299	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.46	□□□□□ -0.42
LMO7-223	ENST00000533299	EVX2	Q03828	476 aa		12.44	□□□□□ -0.42
LMO7-223	ENST00000533299	PITPNM1	O00562	1244 aa		12.44	□□□□□ -0.42
LMO7-223	ENST00000533299	LHX8	Q68G74	356 aa		12.43	□□□□□ -0.42
LMO7-223	ENST00000533299	MYCN	P04198	464 aa	Predicted RBP	12.33	□□□□□ -0.44
LMO7-223	ENST00000533299	PLSCR2	Q9NRY7	297 aa		12.32	□□□□□ -0.44
LMO7-223	ENST00000533299	OSCAR	Q8IYS5	282 aa		12.25	□□□□□ -0.45
LMO7-223	ENST00000533299	C19orf67	A6NJJ6	358 aa		12.2	□□□□□ -0.46
LMO7-223	ENST00000533299	GABBR2	O75899	941 aa		12.2	□□□□□ -0.46
LMO7-223	ENST00000533299	KCNA4	P22459	653 aa		12.14	□□□□□ -0.47
LMO7-223	ENST00000533299	PRKAR2A	P13861	404 aa	Known RBP	12.11	□□□□□ -0.47
LMO7-223	ENST00000533299	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.98	□□□□□ -0.49
LMO7-223	ENST00000533299	SPDYE2B	A6NHP3	402 aa		11.95	□□□□□ -0.5
LMO7-223	ENST00000533299	SPDYE6	P0CI01	402 aa		11.95	□□□□□ -0.5
LMO7-223	ENST00000533299	SPDYE2	Q495Y8	402 aa		11.95	□□□□□ -0.5
LMO7-223	ENST00000533299	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.95	□□□□□ -0.5
LMO7-223	ENST00000533299	POTEI	P0CG38	1075 aa		11.9	□□□□□ -0.5
LMO7-223	ENST00000533299	CLCN6	P51797	869 aa		11.88	□□□□□ -0.51
LMO7-223	ENST00000533299	CLEC11A	Q9Y240	323 aa		11.88	□□□□□ -0.51
LMO7-223	ENST00000533299	PCDH10	Q9P2E7	1040 aa		11.74	□□□□□ -0.53
LMO7-223	ENST00000533299	FBLN2	P98095	1184 aa		11.72	□□□□□ -0.53
LMO7-223	ENST00000533299	POTEM	A6NI47	508 aa		11.72	□□□□□ -0.53
LMO7-223	ENST00000533299	CHADL	Q6NUI6	762 aa		11.72	□□□□□ -0.53
LMO7-223	ENST00000533299	DCBLD2	Q96PD2	775 aa		11.7	□□□□□ -0.54
LMO7-223	ENST00000533299	FOXD4L1	Q9NU39	408 aa		11.7	□□□□□ -0.54
LMO7-223	ENST00000533299	CD44	P16070	742 aa	Known RBP	11.68	□□□□□ -0.54
LMO7-223	ENST00000533299	SSUH2	Q9Y2M2	353 aa		11.67	□□□□□ -0.54
LMO7-223	ENST00000533299	POTEG	Q6S5H5	508 aa		11.65	□□□□□ -0.54
LMO7-223	ENST00000533299	OTUD5	Q96G74	571 aa		11.64	□□□□□ -0.55
LMO7-223	ENST00000533299	PRR29	P0C7W0	189 aa		11.61	□□□□□ -0.55
LMO7-223	ENST00000533299	ZNF692	Q9BU19	519 aa	Predicted RBP	11.6	□□□□□ -0.55
LMO7-223	ENST00000533299	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.53	□□□□□ -0.56
LMO7-223	ENST00000533299	ATXN8OS	P0DMR3	200 aa		11.51	□□□□□ -0.57
LMO7-223	ENST00000533299	ZNF579	Q8NAF0	562 aa	Known RBP	11.51	□□□□□ -0.57
LMO7-223	ENST00000533299	POTEB2	H3BUK9	544 aa		11.45	□□□□□ -0.58
LMO7-223	ENST00000533299	MKRN4P	Q13434	485 aa	Predicted RBP	11.42	□□□□□ -0.58
LMO7-223	ENST00000533299	PABPN1	Q86U42	306 aa	Known RBP eCLIP	11.38	□□□□□ -0.59
LMO7-223	ENST00000533299	ZRANB1	Q9UGI0	708 aa		11.37	□□□□□ -0.59
LMO7-223	ENST00000533299	GALR2	O43603	387 aa	Predicted RBP	11.33	□□□□□ -0.6
LMO7-223	ENST00000533299	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.33	□□□□□ -0.6
LMO7-223	ENST00000533299	MAMSTR	Q6ZN01	415 aa		11.3	□□□□□ -0.6
LMO7-223	ENST00000533299	LCE2D	Q5TA82	110 aa	Predicted RBP	11.24	□□□□□ -0.61
LMO7-223	ENST00000533299	PELP1	Q8IZL8	1130 aa	Known RBP	11.19	□□□□□ -0.62
LMO7-223	ENST00000533299	FAM163A	Q96GL9	167 aa	Predicted RBP	11.19	□□□□□ -0.62
LMO7-223	ENST00000533299	C7	P10643	843 aa		11.18	□□□□□ -0.62
LMO7-223	ENST00000533299	SLC39A7	Q92504	469 aa		11.18	□□□□□ -0.62
LMO7-223	ENST00000533299	METRN	Q9UJH8	293 aa		11.16	□□□□□ -0.62
LMO7-223	ENST00000533299	PAK3	O75914	559 aa	Predicted RBP	11.16	□□□□□ -0.62
LMO7-223	ENST00000533299	POTEJ	P0CG39	1038 aa		11.15	□□□□□ -0.62
LMO7-223	ENST00000533299	ASTL	Q6HA08	431 aa	Predicted RBP	11.12	□□□□□ -0.63
LMO7-223	ENST00000533299	SCUBE2	Q9NQ36	999 aa		11.12	□□□□□ -0.63
LMO7-223	ENST00000533299	ZBTB22	O15209	634 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms