RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 CEP95Q96GE4 821 aa15.83■□□□□ 0.12
VPS28-211ENST00000530790 RLFQ13129 1914 aa15.83■□□□□ 0.12
VPS28-211ENST00000530790 TTLL1O95922 423 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 ERCC3P19447 782 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 CACNB2Q08289 660 aaPredicted RBP15.82■□□□□ 0.12
VPS28-211ENST00000530790 MCMDC2Q4G0Z9 681 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 VPS53Q5VIR6 699 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 MFSD14CQ5VZR4 134 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 NCAPG2Q86XI2 1143 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 FAM227BQ96M60 508 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 MROH8Q9H579 483 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 FBXO28Q9NVF7 368 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 MTMR4Q9NYA4 1195 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 CLIP2Q9UDT6 1046 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 PPP1R9AQ9ULJ8 1098 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 SYNPO2Q9UMS6 1093 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 PARP14Q460N5 1801 aa15.82■□□□□ 0.12
VPS28-211ENST00000530790 F5H6K3 240 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 STRNO43815 780 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 NDUFB10O96000 172 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 HOXC6P09630 235 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 ADORA2AP29274 412 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 KLRC3Q07444 240 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 NMIQ13287 307 aaPredicted RBP15.81■□□□□ 0.12
VPS28-211ENST00000530790 TMEM132BQ14DG7 1078 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 PPP4R3BQ5MIZ7 849 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 PLEKHM2Q8IWE5 1019 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 ANKLE1Q8NAG6 615 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 NEDD1Q8NHV4 660 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 DPF3Q92784 378 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 NUP88Q99567 741 aaPredicted RBP15.81■□□□□ 0.12
VPS28-211ENST00000530790 SLF1Q9BQI6 1058 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 OSBPL3Q9H4L5 887 aa15.81■□□□□ 0.12
VPS28-211ENST00000530790 CCDC171Q6TFL3 1326 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 TSPY2A6NKD2 308 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 VWA5AO00534 786 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 SLC25A27O95847 323 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 TFAP4Q01664 338 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 CTDSPL2Q05D32 466 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 FAM47AQ5JRC9 791 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 DPP9Q86TI2 863 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 LRRC47Q8N1G4 583 aaKnown RBP15.8■□□□□ 0.12
VPS28-211ENST00000530790 GMCL1P1Q8NEA9 526 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 SLC5A4Q9NY91 659 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 ADAMTS5Q9UNA0 930 aa15.8■□□□□ 0.12
VPS28-211ENST00000530790 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.8■□□□□ 0.12
VPS28-211ENST00000530790 ZMYM6O95789 1325 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 COPB2P35606 906 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 MFAP1P55081 439 aaKnown RBP15.79■□□□□ 0.12
VPS28-211ENST00000530790 ALX1Q15699 326 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 ZNF589Q86UQ0 364 aaPredicted RBP15.79■□□□□ 0.12
VPS28-211ENST00000530790 ABRAQ8N0Z2 381 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 NPLOC4Q8TAT6 608 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 MKL1Q969V6 931 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 FLRT1Q9NZU1 646 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 ANAPC4Q9UJX5 808 aa15.79■□□□□ 0.12
VPS28-211ENST00000530790 FCER1AP12319 257 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 SDSP20132 328 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 CCND3P30281 292 aaPredicted RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 IRX6P78412 446 aaPredicted RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 OLFML2BQ68BL8 750 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 NECAB2Q7Z6G3 386 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 RIOX2Q8IUF8 465 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 DIS3LQ8TF46 1054 aaKnown RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 PAWRQ96IZ0 340 aaKnown RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 TOMM22Q9NS69 142 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 DIAPH3Q9NSV4 1193 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 ZNF214Q9UL59 606 aaPredicted RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 OGDHLQ9ULD0 1010 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 ISY1Q9ULR0 285 aaKnown RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 STX8Q9UNK0 236 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 CTDP1Q9Y5B0 961 aaPredicted RBP15.78■□□□□ 0.12
VPS28-211ENST00000530790 MYH4Q9Y623 1939 aa15.78■□□□□ 0.12
VPS28-211ENST00000530790 HIP1O00291 1037 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 RANBP6O60518 1105 aaKnown RBP15.77■□□□□ 0.12
VPS28-211ENST00000530790 FGAP02671 866 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 HSPD1P10809 573 aaKnown RBP15.77■□□□□ 0.12
VPS28-211ENST00000530790 CYP2C19P33261 490 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 STAT3P40763 770 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 SLFN13Q68D06 897 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 PRPF38AQ8NAV1 312 aaKnown RBP15.77■□□□□ 0.12
VPS28-211ENST00000530790 REPS2Q8NFH8 660 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 MMP19Q99542 508 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 TEX13BQ9BXU2 312 aa15.77■□□□□ 0.12
VPS28-211ENST00000530790 COL11A1P12107 1806 aaPredicted RBP15.77■□□□□ 0.11
VPS28-211ENST00000530790 H0YGN5 161 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 ORC4O43929 436 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 COBLO75128 1261 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 KCTD2Q14681 263 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 SNRNP48Q6IEG0 339 aaKnown RBP15.76■□□□□ 0.11
VPS28-211ENST00000530790 KIFC2Q96AC6 838 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 NBPF3Q9H094 633 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 FEM1BQ9UK73 627 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 NR2E3Q9Y5X4 410 aa15.76■□□□□ 0.11
VPS28-211ENST00000530790 EVI5O60447 810 aa15.75■□□□□ 0.11
VPS28-211ENST00000530790 MSCO60682 206 aa15.75■□□□□ 0.11
VPS28-211ENST00000530790 ZBED4O75132 1171 aa15.75■□□□□ 0.11
VPS28-211ENST00000530790 BMP3P12645 472 aa15.75■□□□□ 0.11
VPS28-211ENST00000530790 CYBAP13498 195 aa15.75■□□□□ 0.11
VPS28-211ENST00000530790 CNGA1P29973 690 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms