RNA–Protein interactions for RNA: ENST00000529545.1

VPS11-203, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 576 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-203ENST00000529545 PLS1Q14651 629 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 LRRC41Q15345 812 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 C1orf53Q5VUE5 145 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 NCAPG2Q86XI2 1143 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 MB21D1Q8N884 522 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 TTYH1Q9H313 450 aaPredicted RBP10.93□□□□□ -0.66
VPS11-203ENST00000529545 ZNF236Q9UL36 1845 aa10.93□□□□□ -0.66
VPS11-203ENST00000529545 DNAH12Q6ZR08 3092 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 TRIM43BA6NCK2 446 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 COBLO75128 1261 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 IGHA2P01877 340 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 CLTBP09497 229 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 RARBP10826 455 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 FCER1AP12319 257 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 RAG1P15918 1043 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 SHMT1P34896 483 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 TLE2Q04725 743 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 SEPT2Q15019 361 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 SH3RF1Q7Z6J0 888 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 RNF180Q86T96 592 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 ABRAQ8N0Z2 381 aa10.92□□□□□ -0.66
VPS11-203ENST00000529545 FRAT1Q92837 279 aaPredicted RBP10.92□□□□□ -0.66
VPS11-203ENST00000529545 TRIM43Q96BQ3 446 aaPredicted RBP10.92□□□□□ -0.66
VPS11-203ENST00000529545 FLOT1O75955 427 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 TRIM27P14373 513 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 TJAP1Q5JTD0 557 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 PRAMEF19Q5SWL8 479 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 CCDC8Q9H0W5 538 aaPredicted RBP10.91□□□□□ -0.66
VPS11-203ENST00000529545 SH2D4AQ9H788 454 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 XPNPEP3Q9NQH7 507 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 NRBP1Q9UHY1 535 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 PHF24Q9UPV7 400 aa10.91□□□□□ -0.66
VPS11-203ENST00000529545 MAGEB6P1A0A0J9YX57 407 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 KIAA0355O15063 1070 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 PQBP1O60828 265 aaKnown RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 SLC25A27O95847 323 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 PLCD1P51178 756 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 ATP8B2P98198 1209 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 FPGSQ05932 587 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 FAM47AQ5JRC9 791 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 TMEM179Q6ZVK1 233 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 SSH3Q8TE77 659 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 CLUAP1Q96AJ1 413 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 MAML3Q96JK9 1138 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 CRNKL1Q9BZJ0 848 aaKnown RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 ARHGEF10LQ9HCE6 1279 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 RYDENQ9NUL5 291 aaKnown RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 TMEM39AQ9NV64 488 aa10.9□□□□□ -0.66
VPS11-203ENST00000529545 DBNLQ9UJU6 430 aaKnown RBP10.9□□□□□ -0.66
VPS11-203ENST00000529545 DCDC2CA8MYV0 355 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 TNFRSF10AO00220 468 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 BCAR3O75815 825 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 GUCY1A2P33402 732 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 KCTD2Q14681 263 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 CCDC174Q6PII3 467 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 MCM9Q9NXL9 1143 aa10.89□□□□□ -0.67
VPS11-203ENST00000529545 LAMA2P24043 3122 aaKnown RBP10.89□□□□□ -0.67
VPS11-203ENST00000529545 ZNFX1Q9P2E3 1918 aaKnown RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 A0A0G2JMZ2 1700 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 A0A1W2PQ45 241 aaPredicted RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 A0A1W2PQY0 241 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 A0A1W2PRG0 241 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 PGK1P00558 417 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 DNAJB2P25686 324 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 GABPAQ06546 454 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 GRIN2CQ14957 1233 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 TTF1Q15361 905 aaPredicted RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 SLC44A5Q8NCS7 719 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 NAV1Q8NEY1 1877 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 NUP133Q8WUM0 1156 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 EAF2Q96CJ1 260 aaPredicted RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 ATG4CQ96DT6 458 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 GAS2L1Q99501 681 aaPredicted RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 MMP19Q99542 508 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 TINF2Q9BSI4 451 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 ZNF576Q9H609 170 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 TLR7Q9NYK1 1049 aaKnown RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 SWAP70Q9UH65 585 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 CNPY2Q9Y2B0 182 aa10.88□□□□□ -0.67
VPS11-203ENST00000529545 DIS3Q9Y2L1 958 aaKnown RBP10.88□□□□□ -0.67
VPS11-203ENST00000529545 SMCHD1A6NHR9 2005 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 WDR46O15213 610 aaKnown RBP10.87□□□□□ -0.67
VPS11-203ENST00000529545 AKR1A1P14550 325 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 COL9A1P20849 921 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 ITGB8P26012 769 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 COPB2P35606 906 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 EPHB4P54760 987 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 ICA1Q05084 483 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 SLC9C2Q5TAH2 1124 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 SPICE1Q8N0Z3 855 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 TMEM57Q8N5G2 664 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 TIFAQ96CG3 184 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 TOX2Q96NM4 488 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 RIOK1Q9BRS2 568 aaKnown RBP10.87□□□□□ -0.67
VPS11-203ENST00000529545 TSEN34Q9BSV6 310 aaKnown RBP10.87□□□□□ -0.67
VPS11-203ENST00000529545 ANTXR1Q9H6X2 564 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 VCPKMTQ9H867 229 aa10.87□□□□□ -0.67
VPS11-203ENST00000529545 STARD7Q9NQZ5 370 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms