RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MYO1BO43795 1136 aa8.79□□□□□ -1
CD44-228ENST00000528455 FSHRP23945 695 aa8.79□□□□□ -1
CD44-228ENST00000528455 HSPA4P34932 840 aa8.79□□□□□ -1
CD44-228ENST00000528455 HIRAP54198 1017 aaPredicted RBP8.79□□□□□ -1
CD44-228ENST00000528455 NR5A1Q13285 461 aa8.79□□□□□ -1
CD44-228ENST00000528455 SBK1Q52WX2 424 aa8.79□□□□□ -1
CD44-228ENST00000528455 VPS53Q5VIR6 699 aa8.79□□□□□ -1
CD44-228ENST00000528455 CDC42EP5Q6NZY7 148 aa8.79□□□□□ -1
CD44-228ENST00000528455 CCDC129Q6ZRS4 1044 aa8.79□□□□□ -1
CD44-228ENST00000528455 CDC37L1Q7L3B6 337 aa8.79□□□□□ -1
CD44-228ENST00000528455 LCORLQ8N3X6 602 aa8.79□□□□□ -1
CD44-228ENST00000528455 SH3RF3Q8TEJ3 882 aaPredicted RBP8.79□□□□□ -1
CD44-228ENST00000528455 IL17RAQ96F46 866 aa8.79□□□□□ -1
CD44-228ENST00000528455 UCN2Q96RP3 112 aa8.79□□□□□ -1
CD44-228ENST00000528455 C22orf23Q9BZE7 217 aa8.79□□□□□ -1
CD44-228ENST00000528455 ABT1Q9ULW3 272 aaKnown RBP8.79□□□□□ -1
CD44-228ENST00000528455 CNTNAP1P78357 1384 aa8.78□□□□□ -1
CD44-228ENST00000528455 PIK3CDO00329 1044 aa8.78□□□□□ -1
CD44-228ENST00000528455 TRAF5O00463 557 aa8.78□□□□□ -1
CD44-228ENST00000528455 WNT10BO00744 389 aa8.78□□□□□ -1
CD44-228ENST00000528455 FOXP2O15409 715 aa8.78□□□□□ -1
CD44-228ENST00000528455 PRKAB2O43741 272 aa8.78□□□□□ -1
CD44-228ENST00000528455 NR3C2P08235 984 aa8.78□□□□□ -1
CD44-228ENST00000528455 ZKSCAN1P17029 563 aaPredicted RBP8.78□□□□□ -1
CD44-228ENST00000528455 USP5P45974 858 aa8.78□□□□□ -1
CD44-228ENST00000528455 IMMTQ16891 758 aaKnown RBP8.78□□□□□ -1
CD44-228ENST00000528455 TEX11Q8IYF3 940 aa8.78□□□□□ -1
CD44-228ENST00000528455 TGFBRAP1Q8WUH2 860 aa8.78□□□□□ -1
CD44-228ENST00000528455 TBC1D32Q96NH3 1257 aa8.78□□□□□ -1
CD44-228ENST00000528455 DCP1AQ9NPI6 582 aaPredicted RBP8.78□□□□□ -1
CD44-228ENST00000528455 ANAPC4Q9UJX5 808 aa8.78□□□□□ -1
CD44-228ENST00000528455 RBM8AQ9Y5S9 174 aaKnown RBP8.78□□□□□ -1
CD44-228ENST00000528455 WASF2Q9Y6W5 498 aa8.78□□□□□ -1
CD44-228ENST00000528455 MAST2Q6P0Q8 1798 aa8.78□□□□□ -1
CD44-228ENST00000528455 SHTN1A0MZ66 631 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 RASSF10A6NK89 507 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 USP17L12C9JPN9 530 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 USP17L21D6R901 530 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 GFRA3O60609 400 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 ENTPD3O75355 529 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 WDHD1O75717 1129 aaPredicted RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 FGRP09769 529 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 PCP11498 1178 aaKnown RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 VEGFBP49765 207 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 NT5C2P49902 561 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 KRT32Q14532 448 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 TBC1D10BQ4KMP7 808 aaPredicted RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 CST9Q5W186 159 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 CREB3L3Q68CJ9 461 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 CTR9Q6PD62 1173 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 TTC6Q86TZ1 520 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 FAM83AQ86UY5 434 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 FOXP4Q8IVH2 680 aaPredicted RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 AMOTL1Q8IY63 956 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 TRPM4Q8TD43 1214 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 SDR42E1Q8WUS8 393 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 FAM151AQ8WW52 585 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 DCPSQ96C86 337 aaKnown RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 GLIS2Q9BZE0 524 aaPredicted RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 TM6SF1Q9BZW5 370 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 NAPBQ9H115 298 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 DHX36Q9H2U1 1008 aaKnown RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 TDRD3Q9H7E2 651 aaKnown RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 ZNF70Q9UC06 446 aaPredicted RBP8.77□□□□□ -1.01
CD44-228ENST00000528455 ECM29Q5VYK3 1845 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 CDK5RAP2Q96SN8 1893 aa8.77□□□□□ -1.01
CD44-228ENST00000528455 POLR2AP24928 1970 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 SLC27A2O14975 620 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 CELF2O95319 508 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 SLC3A2P08195 630 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 CYP21A2P08686 494 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 HSPA1AP0DMV8 641 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 HSPA1BP0DMV9 641 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 PSMA5P28066 241 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 ECE1P42892 770 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 TDO2P48775 406 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 TNNI2P48788 182 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 RAB15P59190 212 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 FMR1Q06787 632 aaKnown RBP eCLIP8.76□□□□□ -1.01
CD44-228ENST00000528455 NNTQ13423 1086 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 KIF4BQ2VIQ3 1234 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 NBPF9Q3BBW0 867 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 C12orf60Q5U649 245 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 USP48Q86UV5 1035 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 RNF135Q8IUD6 432 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 MCM9Q9NXL9 1143 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 TMOD2Q9NZR1 351 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 ARPP21Q9UBL0 812 aaPredicted RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 TRPM7Q96QT4 1865 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 WDR33Q9C0J8 1336 aaKnown RBP8.76□□□□□ -1.01
CD44-228ENST00000528455 MYH1P12882 1939 aa8.76□□□□□ -1.01
CD44-228ENST00000528455 FOCADQ5VW36 1801 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 ERVH48-1M5A8F1 160 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 NRG2O14511 850 aaPredicted RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 EGFRP00533 1210 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 POLR3DP05423 398 aaPredicted RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 HMGB1P09429 215 aaKnown RBP8.75□□□□□ -1.01
CD44-228ENST00000528455 TNFAIP1Q13829 316 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 KRT26Q7Z3Y9 468 aa8.75□□□□□ -1.01
CD44-228ENST00000528455 METTL16Q86W50 562 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms