RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 MAPK4P31152 587 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 GJA8P48165 433 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 TFAP4Q01664 338 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 KLRC3Q07444 240 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 PLEKHH3Q7Z736 793 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 TBC1D10CQ8IV04 446 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 LRRC47Q8N1G4 583 aaKnown RBP12.7□□□□□ -0.38
CD44-227ENST00000528086 SPATC1LQ9H0A9 340 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 CRISPLD2Q9H0B8 497 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 RNF208Q9H0X6 261 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 CLIP2Q9UDT6 1046 aa12.7□□□□□ -0.38
CD44-227ENST00000528086 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
CD44-227ENST00000528086 CEP290O15078 2479 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 COBLO75128 1261 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 FLOT1O75955 427 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 XRCC5P13010 732 aaKnown RBP12.69□□□□□ -0.38
CD44-227ENST00000528086 ERCC3P19447 782 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 GRB14Q14449 540 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 TTC22Q5TAA0 569 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 U2AF1L4Q8WU68 220 aaKnown RBP12.69□□□□□ -0.38
CD44-227ENST00000528086 TMEM106CQ9BVX2 250 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 NACAP1Q9BZK3 213 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 HOXC10Q9NYD6 342 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 ZNF214Q9UL59 606 aaPredicted RBP12.69□□□□□ -0.38
CD44-227ENST00000528086 PPP1R9AQ9ULJ8 1098 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 PLXNA1Q9UIW2 1896 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 DNAH12Q6ZR08 3092 aa12.69□□□□□ -0.38
CD44-227ENST00000528086 ZMYM6O95789 1325 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 VWA5AO00534 786 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 ORC4O43929 436 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 SGPL1O95470 568 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 HMGCRP04035 888 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 HOXC6P09630 235 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 HAND2P61296 217 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 CACNB2Q08289 660 aaPredicted RBP12.68□□□□□ -0.38
CD44-227ENST00000528086 MAP2K5Q13163 448 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 RCSD1Q6JBY9 416 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 CWC27Q6UX04 472 aaKnown RBP12.68□□□□□ -0.38
CD44-227ENST00000528086 ZNF444Q8N0Y2 327 aaPredicted RBP12.68□□□□□ -0.38
CD44-227ENST00000528086 TRPV1Q8NER1 839 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 DEFB118Q96PH6 123 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 NUDT12Q9BQG2 462 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 BIN2Q9UBW5 565 aaPredicted RBP12.68□□□□□ -0.38
CD44-227ENST00000528086 RIPK3Q9Y572 518 aa12.68□□□□□ -0.38
CD44-227ENST00000528086 SLC15A5A6NIM6 579 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 GMCL1P1Q8NEA9 526 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 SHCBP1Q8NEM2 672 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 SOCS4Q8WXH5 440 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 CHMP4CQ96CF2 233 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.67□□□□□ -0.38
CD44-227ENST00000528086 SH2D4AQ9H788 454 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 TAF6LQ9Y6J9 622 aa12.67□□□□□ -0.38
CD44-227ENST00000528086 LCTP09848 1927 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 NEDD4P46934 1319 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 TTLL1O95922 423 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 TSPY3P0CV98 308 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 TSPY8P0CW00 308 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
CD44-227ENST00000528086 CCND3P30281 292 aaPredicted RBP12.66□□□□□ -0.38
CD44-227ENST00000528086 UBXN2AP68543 259 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 PDE4BQ07343 736 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 LHX8Q68G74 356 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
CD44-227ENST00000528086 MB21D1Q8N884 522 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 DIS3LQ8TF46 1054 aaKnown RBP12.66□□□□□ -0.38
CD44-227ENST00000528086 APBA2Q99767 749 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 GOPCQ9HD26 462 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 MCM3APO60318 1980 aa12.66□□□□□ -0.38
CD44-227ENST00000528086 RPTORQ8N122 1335 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 RANBP2P49792 3224 aaKnown RBP12.65□□□□□ -0.38
CD44-227ENST00000528086 TAL1P17542 331 aaPredicted RBP12.65□□□□□ -0.38
CD44-227ENST00000528086 ADORA2AP29274 412 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 RGS2P41220 211 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 CCNA1P78396 465 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 SLFN13Q68D06 897 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 RIOX2Q8IUF8 465 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 SLF1Q9BQI6 1058 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 SYNPO2Q9UMS6 1093 aa12.65□□□□□ -0.38
CD44-227ENST00000528086 ZNF536O15090 1300 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 CHMLP26374 656 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 CYP2C19P33261 490 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 PTH1RQ03431 593 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 COL9A3Q14050 684 aaPredicted RBP12.64□□□□□ -0.39
CD44-227ENST00000528086 AKNAD1Q5T1N1 836 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 STAG1Q8WVM7 1258 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 FGD4Q96M96 766 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 SLC38A10Q9HBR0 1119 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 OGDHLQ9ULD0 1010 aa12.64□□□□□ -0.39
CD44-227ENST00000528086 TSPY2A6NKD2 308 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 ATP2A1O14983 1001 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 RAD21O60216 631 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 RANBP6O60518 1105 aaKnown RBP12.63□□□□□ -0.39
CD44-227ENST00000528086 BMP3P12645 472 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 ZKSCAN1P17029 563 aaPredicted RBP12.63□□□□□ -0.39
CD44-227ENST00000528086 MCCP23508 829 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 STAT3P40763 770 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 SNAP25P60880 206 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 PLS1Q14651 629 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 WDR78Q5VTH9 848 aa12.63□□□□□ -0.39
CD44-227ENST00000528086 TTBK2Q6IQ55 1244 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms