RNA–Protein interactions for RNA: ENST00000527046.5

NEDD8-205, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 847 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-205ENST00000527046 USP17L15C9J2P7 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L13C9JLJ4 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L11C9JVI0 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L18D6R9N7 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L22D6RA61 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L17D6RBQ6 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L19D6RCP7 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L20D6RJB6 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 WDR46O15213 610 aaKnown RBP12.64□□□□□ -0.39
NEDD8-205ENST00000527046 CA12O43570 354 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 EIF5BO60841 1220 aaKnown RBP12.64□□□□□ -0.39
NEDD8-205ENST00000527046 TRPA1O75762 1119 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 TBC1D8O95759 1140 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 HMGB1P09429 215 aaKnown RBP12.64□□□□□ -0.39
NEDD8-205ENST00000527046 PSMA5P28066 241 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 ZNF543Q08ER8 600 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 USP17L24Q0WX57 530 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 CRHR2Q13324 411 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 WTAPQ15007 396 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 IFIT1BQ5T764 474 aaKnown RBP12.64□□□□□ -0.39
NEDD8-205ENST00000527046 C17orf99Q6UX52 265 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 BTNL9Q6UXG8 535 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 NBPF11Q86T75 865 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 REPS2Q8NFH8 660 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 LARP6Q9BRS8 491 aaKnown RBP12.64□□□□□ -0.39
NEDD8-205ENST00000527046 MYL10Q9BUA6 226 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 SH2D4AQ9H788 454 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 GOPCQ9HD26 462 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 TXNRD2Q9NNW7 524 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 TMOD4Q9NZQ9 345 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 HPS5Q9UPZ3 1129 aa12.64□□□□□ -0.39
NEDD8-205ENST00000527046 SMCHD1A6NHR9 2005 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 SPDYE16A6NNV3 312 aaPredicted RBP12.63□□□□□ -0.39
NEDD8-205ENST00000527046 PLA2G6O60733 806 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 BMP3P12645 472 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 DSG3P32926 999 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 Q3C1V9 767 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 PPP4R3BQ5MIZ7 849 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 LBX2Q6XYB7 198 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 KCTD1Q719H9 257 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 ZNF654Q8IZM8 581 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 CPVLQ9H3G5 476 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 MAD2L2Q9UI95 211 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 CYP46A1Q9Y6A2 500 aa12.63□□□□□ -0.39
NEDD8-205ENST00000527046 TLR2O60603 784 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 GOLGA8HP0CJ92 632 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 BCRP11274 1271 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 CTGFP29279 349 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 MAP2K1Q02750 393 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-205ENST00000527046 APOBRQ0VD83 1088 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 COG2Q14746 738 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 GRM4Q14833 912 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 APOA5Q6Q788 366 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 RAB11FIP4Q86YS3 637 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 TMTC2Q8N394 836 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 DCAF4Q8WV16 495 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 BRF1Q92994 677 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 ATG4CQ96DT6 458 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 KAT14Q9H8E8 782 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 PDRG1Q9NUG6 133 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 BTBD7Q9P203 1132 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 MTMR7Q9Y216 660 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 A0A0G2JMZ2 1700 aa12.62□□□□□ -0.39
NEDD8-205ENST00000527046 FRMPD2Q68DX3 1309 aaPredicted RBP12.62□□□□□ -0.39
NEDD8-205ENST00000527046 CEP350Q5VT06 3117 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 COL11A1P12107 1806 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-205ENST00000527046 TMEM232C9JQI7 657 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 CYTH3O43739 400 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 CD2BP2O95400 341 aaKnown RBP12.61□□□□□ -0.39
NEDD8-205ENST00000527046 RXRAP19793 462 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 CDC27P30260 824 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 SLC16A2P36021 539 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 SLC1A4P43007 532 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 HERVK_113P62684 666 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 FUT2Q10981 343 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 TAF1CQ15572 869 aaPredicted RBP12.61□□□□□ -0.39
NEDD8-205ENST00000527046 MAP3K14Q99558 947 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 UBA5Q9GZZ9 404 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 GPCPD1Q9NPB8 672 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 SAGE1Q9NXZ1 904 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 TSKSQ9UJT2 592 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 PPP1R9AQ9ULJ8 1098 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 ZNF536O15090 1300 aa12.61□□□□□ -0.39
NEDD8-205ENST00000527046 FOXN1O15353 648 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 RAD21O60216 631 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 ALDH1A1P00352 501 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 PDIA3P30101 505 aaKnown RBP12.6□□□□□ -0.39
NEDD8-205ENST00000527046 NEK4P51957 841 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 AK2P54819 239 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 ST3GAL1Q11201 340 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 SART3Q15020 963 aaKnown RBP12.6□□□□□ -0.39
NEDD8-205ENST00000527046 FANCBQ8NB91 859 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 MTMR8Q96EF0 704 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 HOXC10Q9NYD6 342 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 MORF4L1Q9UBU8 362 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 CPA4Q9UI42 421 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 FEM1BQ9UK73 627 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 PRR12Q9ULL5 1215 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 TPCN1Q9ULQ1 816 aa12.6□□□□□ -0.39
NEDD8-205ENST00000527046 KLF18A0A0U1RQI7 1052 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms